Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Grus_20japonensis_20[genbank_20GCA_5F002002985.1_202017-02-10] 357,545 sequences; 1,265,634,512 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq10749 136 4e-27 seq76856 107 2e-18 seq302859 87.8 2e-12 seq833 87.8 2e-12 >seq10749 Length=40418 Score = 136 bits (150), Expect = 4e-27 Identities = 169/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || ||||| ||||||||| |||| || || ||| Sbjct 40280 ATGCAGATCTTTGTGAAGACCCTGACAGGCAAGACCATCACCCTCGAGGTTGAGCCCAGT 40221 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | || | || || | ||||| || ||||| ||| | || || Sbjct 40220 GACACCATTGAGAACG-TGAAAGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGATCA 40162 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || |||| || || || |||||||| || | |||||||| |||||||| Sbjct 40161 GCAGAGGCTGATCTTTGCTGGGAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAA 40102 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||| |||| |||||||| ||| ||||| ||||||| ||| Sbjct 40101 CATCCAGAAGGAATCCACCCTGCATCTTGTGCTGCGCCTGAGGGGTGGC 40053 Score = 102 bits (112), Expect = 8e-17 Identities = 97/124 (78%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 40794 CATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCAC 40853 ||| ||| | || ||||| | | |||| ||| ||||| |||||||| || | |||||| Sbjct 40404 CATTCCCCCCGATCAGCAGAGGTTGATCTTCGCTGGCAAGCAGCTGGAAGATGGGCGCAC 40345 Query 40854 CCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGG 40913 ||| ||||||||||||||||||||| |||| |||||||| ||| |||| |||| || Sbjct 40344 CCTGTCCGACTACAACATCCAGAAGGAATCCACTCTGCATCTTGTGCTGCGTCTGAGAGG 40285 Query 40914 CGGC 40917 ||| Sbjct 40284 TGGC 40281 >seq76856 Length=2926 Score = 107 bits (118), Expect = 2e-18 Identities = 92/114 (81%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 ||||| |||||||| || ||||| ||||| ||||| || |||||||| || | || || Sbjct 2691 GAGCCCCTGCTGCGGGACAACCCTCGCCGCTTCGTCATCTTCCCCATCCAGTCCCACGAT 2632 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTG 116689 || |||| |||||||| ||||||||||| || |||||||| | ||||||||| Sbjct 2631 ATCTGGCAGATGTACAAGAAGGCCGAGGCTTCCTTCTGGACGGCGGAGGAGGTG 2578 >seq302859 Length=447 Score = 87.8 bits (96), Expect = 2e-12 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 || |||||| | |||||||| || | |||| |||||||||||||||||| || | ||| Sbjct 205 GGGATCCCCCCTGACCAGCAGCGGTTGATCTTCGCGGGCAAACAGCTGGAGGATGGCCGC 146 Query 40852 ACCCTCAACGACTACAACATCCAGAA 40877 |||||| ||||||||||||||||| Sbjct 145 ACCCTCGCAGACTACAACATCCAGAA 120 >seq833 Length=14924 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101 |||| ||||| || || || || ||| ||||||||||||| || || || ||||||| Sbjct 5412 TGGTTGCCTTTGCTGCAGTTGAAGGCATCTTCTTTTCGGGTTCCTTTGCTGCTATATTTT 5353 Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGG 117161 |||| ||||| | ||||| ||||| || ||||||||| ||| || || || ||| | Sbjct 5352 GGCTGAAGAAGAGGGGCCTGATGCCTGGACTGACTTTCTCCAATGAACTTATTAGCAGAG 5293 Query 117162 ACGAGG 117167 | |||| Sbjct 5292 ATGAGG 5287 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 512916524389200