Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Grus_20japonensis_20[genbank_20GCA_5F002002985.1_202017-02-10] 357,545 sequences; 1,265,634,512 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq41976 87.8 1e-12 >seq41976 Length=14171 Score = 87.8 bits (96), Expect = 1e-12 Identities = 108/147 (73%), Gaps = 8/147 (5%) Strand=Plus/Plus Query 97402 TATTCTGCTCCAAAATGCCTCCATTGGAATCCATAAACAGGTCCAAGGTCTCCTTCTTCT 97461 |||||||||||||| |||| ||| ||||| ||||| || ||||| | || || || ||| Sbjct 11750 TATTCTGCTCCAAAGTGCCGCCACTGGAAACCATACACTGGTCCCAAATCCCCCTCCTCT 11809 Query 97462 CTATCACAGAAACCAAGCTTATCTAAATAGGACCT----AGATCCATTTGCATCCCAAAT 97517 || || |||||| ||||||| |||| || |||||||| ||||||||||| Sbjct 11810 CTGGTACTGAAACCCTGCTTATC----CAGGAACTCACGTGATCCATTAGCATCCCAAAT 11865 Query 97518 GTGCACACCAGATGCTGCAAGCTCTTT 97544 | ||||| ||| | |||||||| Sbjct 11866 CTTTACACCCTTTGCAGAGAGCTCTTT 11892 Score = 86.0 bits (94), Expect = 4e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 97117 GTGACATGGGCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCT 97176 ||||||||||| ||||| | || | || |||||||| ||||| || |||||||| ||| Sbjct 8409 GTGACATGGGCAATCATGTATGTGAGCAGTGAATAGCTGGCAATATTGAAAGGCACTCCT 8468 Query 97177 AGTCCCATATCAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCCATCACACACATAA 97236 ||||||||||| | || || ||||| | || || || | | |||| ||||| Sbjct 8469 AGTCCCATATCTCCAGACCTCTGATAGAGTTGGCAAGACAATTCACCATTTAGAACATAG 8528 Query 97237 AACTGACTCAATACATGACAGGGGGGCAACGCCAT 97271 ||||| | | |||| || || ||||| ||||| Sbjct 8529 AACTGGCAAAGGGCATGGCATGGTGGCAAAGCCAT 8563 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 345272861085650