Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Grus_20japonensis_20[genbank_20GCA_5F002002985.1_202017-02-10] 357,545 sequences; 1,265,634,512 total letters Query= NC_002229.3 Length=177874 Score E Sequences producing significant alignments: (Bits) Value seq326267 235 6e-57 seq63862 102 9e-17 >seq326267 Length=461 Score = 235 bits (260), Expect = 6e-57 Identities = 176/207 (85%), Gaps = 7/207 (3%) Strand=Plus/Plus Query 1923 CGCCCGCAGGCCGCGGTCGGCCGGCACCCGCCATTGCCGCCGCGAAGAGTTCGCCTCTGT 1982 |||||| ||||||||| |||||||| ||||||| ||||||||||||||| ||| |||||| Sbjct 136 CGCCCGGAGGCCGCGGGCGGCCGGCTCCCGCCACTGCCGCCGCGAAGAGCTCGTCTCTGT 195 Query 1983 CAGCCTCGGCGGCGCCCGGGAGATGCGgcgcgcggccccgcgc-------ccccagcaga 2035 |||||||||||||| ||||||| || ||||| |||||||| |||||||||| Sbjct 196 CAGCCTCGGCGGCGGCCGGGAGCGAAGGGGCGCGCCCCCGCGCCGGGGGACCCCAGCAGA 255 Query 2036 gcaacacgggagcggcgcccccggggcaacccccgcgccccccTGCGCCGTGGGGCGCGC 2095 |||| |||||||||||||||||||| ||||| |||||| |||| |||||||||||||| Sbjct 256 GCAAAACGGGAGCGGCGCCCCCGGGCCAACCGCCGCGCTTCCCTCAGCCGTGGGGCGCGC 315 Query 2096 GGACGGCGTCGCTCCCACACGCGCGGC 2122 || ||||| ||| || ||||||||||| Sbjct 316 GGCCGGCGCCGCCCCGACACGCGCGGC 342 Score = 235 bits (260), Expect = 6e-57 Identities = 176/207 (85%), Gaps = 7/207 (3%) Strand=Plus/Minus Query 139498 GCCGCGCGTGTGGGAGCGACGCCGTCCGCGCGCCCCACGGCGCAggggggcgcgggggtt 139557 ||||||||||| || ||| ||||| |||||||||||||||| |||| |||||| |||| Sbjct 342 GCCGCGCGTGTCGGGGCGGCGCCGGCCGCGCGCCCCACGGCTGAGGGAAGCGCGGCGGTT 283 Query 139558 gccccgggggcgccgctcccgtgttgctctgctgggg-------gcgcggggccgcgcgc 139610 | |||||||||||||||||||| |||||||||||||| |||||||| ||||| | Sbjct 282 GGCCCGGGGGCGCCGCTCCCGTTTTGCTCTGCTGGGGTCCCCCGGCGCGGGGGCGCGCCC 223 Query 139611 CGCATCTCCCGGGCGCCGCCGAGGCTGACAGAGGCGAACTCTTCGCGGCGGCAATGGCGG 139670 | ||||||| |||||||||||||||||||| ||| ||||||||||||||| |||||| Sbjct 222 CTTCGCTCCCGGCCGCCGCCGAGGCTGACAGAGACGAGCTCTTCGCGGCGGCAGTGGCGG 163 Query 139671 GTGCCGGCCGACCGCGGCCTGCGGGCG 139697 | |||||||| ||||||||| |||||| Sbjct 162 GAGCCGGCCGCCCGCGGCCTCCGGGCG 136 >seq63862 Length=11211 Score = 102 bits (112), Expect = 9e-17 Identities = 210/302 (70%), Gaps = 29/302 (10%) Strand=Plus/Plus Query 1501 TGGGGCGTGGCGGGAGATGAATGACCGCGGAGTTCCAAACTCCCGC-ACCGGC-CCCTCT 1558 ||| ||| | |||| || ||||| || | ||||||||||||||| || | ||||| Sbjct 10929 TGGTGCG-GCCGGGGGACGAATGGCCCGAGCGTTCCAAACTCCCGCCACTCTCTCCCTCC 10987 Query 1559 CTGCTCGCTCTCCTCCCCGCCGCCAATAGCTACGCGGCAGCGTACAGC-CCGGCCAATAG 1617 | | | ||| || | |||| |||||| | || | || || | ||| ||||| | Sbjct 10988 CACCCC-CTCGCCCCGCCGCAGCCAATGGTAGCGGAGGAGGGTGCCCTTCCGACCAATGG 11046 Query 1618 GCGCGCGGTGGGCGTAGGCGGAGGAAGCTACAAGA-GCCCCACGCGGGGTTCCCCCGGCA 1676 |||||||||| || ||| ||||| ||| |||| || || || ||| ||||| | Sbjct 11047 AGGCGCGGTGGGTGT-GGCCGAGGAGGCTTTAAGAAGCTCCGCGGGGGCGCCCCCCAGT- 11104 Query 1677 CACGTGGCGGGTGGA-AGGCTCCGCTGTGTCTAACCCTAATCGGAGGTATTGATGGTACT 1735 | |||||||||||| |||| | | ||| ||||||||||| | || Sbjct 11105 CGCGTGGCGGGTGGGGAGGCCCTGGTGTCACTAACCCTAATGG---------------CT 11149 Query 1736 GTCGCCGCGCTCCCTCCGCCCG----CTGTTT-ACTCGCTGACTTTCAGCGGGCTAGGGG 1790 | ||||||||||| |||||| |||||| ||||||||||||||||||| | ||||| Sbjct 11150 GCTGCCGCGCTCCCCGCGCCCGTCCGCTGTTTTACTCGCTGACTTTCAGCGGACGAGGGG 11209 Query 1791 AG 1792 || Sbjct 11210 AG 11211 Score = 102 bits (112), Expect = 9e-17 Identities = 210/302 (70%), Gaps = 29/302 (10%) Strand=Plus/Minus Query 139828 CTCCCCTAGCCCGCTGAAAGTCAGCGAGT-AAACAG----CGGGCGGAGGGAGCGCGGCG 139882 ||||||| | ||||||||||||||||||| |||||| |||||| ||||||||||| Sbjct 11211 CTCCCCTCGTCCGCTGAAAGTCAGCGAGTAAAACAGCGGACGGGCGCGGGGAGCGCGGCA 11152 Query 139883 ACAGTACCATCAATACCTCCGATTAGGGTTAGACACAGCGGAGCCT-TCCACCCGCCACG 139941 ||| | ||||||||||| ||| | | |||| |||||||||||| Sbjct 11151 GCAG---------------CCATTAGGGTTAGTGACACCAGGGCCTCCCCACCCGCCACG 11107 Query 139942 TGTGCCGGGGGAACCCCGCGTGGGGC-TCTTGTAGCTTCCTCCGCCTACGCCCACCGCGC 140000 | | ||||| ||| || || || |||| ||| ||||| ||| || |||||||||| Sbjct 11106 CG-ACTGGGGGGCGCCCCCGCGGAGCTTCTTAAAGCCTCCTCGGCC-ACACCCACCGCGC 11049 Query 140001 GCCTATTGGCCGG-GCTGTACGCTGCCGCGTAGCTATTGGCGGCGGGGAGGAGAGCGAGC 140059 | ||||| ||| | || || | || | |||||| |||| | || ||| | | Sbjct 11048 CTCCATTGGTCGGAAGGGCACCCTCCTCCGCTACCATTGGCTGCGGCGGGGCGAG-GGGG 10990 Query 140060 AGAGAGGG-GCCGGT-GCGGGAGTTTGGAACTCCGCGGTCATTCATCTCCCGCCACGCCC 140117 | ||||| | || ||||||||||||||| | || ||||| || |||| | ||| | Sbjct 10989 TGGGAGGGAGAGAGTGGCGGGAGTTTGGAACGCTCGGGCCATTCGTCCCCCGGC-CGCAC 10931 Query 140118 CA 140119 || Sbjct 10930 CA 10929 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 566525453698800