Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Grus_20japonensis_20[genbank_20GCA_5F002002985.1_202017-02-10] 357,545 sequences; 1,265,634,512 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq251720 289 2e-73 seq251719 161 7e-35 seq180288 91.5 1e-13 >seq251720 Length=1010 Score = 289 bits (320), Expect = 2e-73 Identities = 545/791 (69%), Gaps = 13/791 (2%) Strand=Plus/Minus Query 107523 ATCAACTGTTCTGGGATCACGCGAGGGGACCAGGAAGCAGTGGTCCAGGCCCTCCTAGAC 107582 |||||||| || |||||| || |||||| ||||||| | ||||||| || | Sbjct 784 ATCAACTGCTCGGGGATCGTCCGTGGGGACGAGGAAGCCATCCAGGAGGCCCTGCTCAGC 725 Query 107583 AACCTGGAAGTGAAGAA--AAAGCGGTCGCCTCTCACTGGCACCTATTACCTCAACATAA 107640 |||||||| | ||| |||| ||| ||| || | | | | ||||| ||||| | Sbjct 724 AACCTGGAGATTGCGAACAAAAGGGGTTCCCTG--ACGGCCGGCGAGTACCTGAACATGA 667 Query 107641 CCAGAGACTGTGAGCGCTT-CAAG--GCCCAAAGGAAGTTCATACAGTTCCCACTGAGTA 107697 | | ||||| ||| || |||| | || || |||||| |||||||||||||| Sbjct 666 CGAAGGACTGC-AGCAATTTCAAGAAGACCC--GGCGGTTCATTGAGTTCCCACTGAGTC 610 Query 107698 AAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATTGAAAACT 107757 | || ||| ||| ||||| || |||||||| ||||| |||| | || || || | | Sbjct 609 AGGAGGAGGCAGAGTTCCCTATCGCCTACTCCATGGTCATCCACAACAA-ATCGAGATGT 551 Query 107758 TTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGTGGATG 107817 | || ||||| ||||| || |||| |||||||||||||| ||||| |||||| | || Sbjct 550 TCGAGCGGCTCCTGCGGTCCCTGTACGCCCCTCAGAACATCTACTGCGTCCACATTGACA 491 Query 107818 TGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCCCAATG 107877 |||||||| | | ||| | ||||| || |||||| | | ||||||||||||| Sbjct 490 GCAAGTCCCCGGCCGCCTTCCAGGAGGCCGTGCGGGCCATCGTAGCTTGCTTCCCCAATG 431 Query 107878 TCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTG 107937 |||| |||| || ||| |||||| ||||||||||||||| | |||| || | Sbjct 430 TCTTTGTGGCTAGCCGCCTGGAAAAGGTGGTCTATGCCTCCTGGTCCCGGCTGCAGGCCG 371 Query 107938 ACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCATGGAAGTACTTACTGAATA 107997 |||| ||||| ||| | ||| || | |||||| | ||||||||| ||| | || || | Sbjct 370 ACCTCAACTGCATGCAGGACCTGTTGCAGAGCCCTGTGCCATGGCGCTACGTCCTCAACA 311 Query 107998 CATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGGCCCTCAAGATGT 108057 | ||||| ||||| |||||||| || |||||||||||||| |||| | ||| ||| || Sbjct 310 CCTGCGGCACAGATTTCCCCATCAAAACCAATGCCGAGATCGTCCGTGTCCTGAAGGTGC 251 Query 108058 TGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCCaaaaaaaaTCGCTGGA 108117 || |||| |||||| |||||||| ||| || || | ||| | |||||| Sbjct 250 TGCAGGGGCGGAACAGCATGGAGTCAGAGAAGCCCTCGGCCCTCAAGCGGGAGCGCTGGC 191 Query 108118 AATACCGCTATGAGGTGACAGACACACTGTACCCTACCAGCAAGA-TGAAGGACCCTCCC 108176 | |||| | || | ||| || | | || | |||| | | ||| || || Sbjct 190 AGTACCACCATAAAGTGGGGGAGTTCATCTTCCGGA-CAGCCACAGAGAAACTGCCACCA 132 Query 108177 CCTGATAATTTACCCATGTTCACAGGGAATGCCTATTTTGTGGCCTCTCGAGCCTTTGTC 108236 || | || | ||||||||||| || || || || | ||| | | || ||||| || Sbjct 131 CCCCACAACTCTCCCATGTTCACGGGCAACGCGTACATCCTGGTCACACGGGCCTTCGTG 72 Query 108237 CAACATGTCTTAGACAACCCTAAATCCCAAAGACTGGTTGAATGGGTCAAAGACACCTAT 108296 || || |||| || ||||| | | || | | || |||| ||| |||||||| Sbjct 71 CAGCACATCTTTGAGAACCCCACGGCACAGCAGTTCCTCGAGTGGGCCAAGGACACCTAC 12 Query 108297 AGCCCCGACGA 108307 ||||| ||||| Sbjct 11 AGCCCTGACGA 1 >seq251719 Length=519 Score = 161 bits (178), Expect = 7e-35 Identities = 238/335 (71%), Gaps = 4/335 (1%) Strand=Plus/Minus Query 108290 CACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCG--TGCTCCGTGGATGCCT 108347 |||||| ||||| ||||| ||| ||||||||||||| | || ||| | | | |||| Sbjct 519 CACCTACAGCCCTGACGAGCACGTCTGGGCCACCCTCAACCGCATGCCCGGCG--TGCCA 462 Query 108348 GGCTCTGTTCCTAGCCACCCCAAGTATCACATCTCAGACATGACTGCCATCGCCAGGCTC 108407 ||| | | || || ||||| || || | ||||||| ||| | || | || Sbjct 461 GGCGCCATGCCCCAGAACGACAAGTTCCAGCTCCCGGACATGAACGCCCTGCCCCGCCTG 402 Query 108408 GTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCTTATGCACCCTGCTCT 108467 || ||||||||||||| ||||| || ||||| ||||||||| || |||||||| | Sbjct 401 GTGAAGTGGCAGTACCTGGAGGGCGACACCAGCAAGGGGGCGCCCTACCCACCCTGCACC 342 Query 108468 GGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTACTGGATTCTCCAG 108527 || || | | | ||| ||||||| ||||||| || ||| || |||||| || ||| Sbjct 341 GGCCAGCACCAGCGCGCCGTCTGCATCTACGGGGTGGGCGACGTGCCCTGGATGCTGCAG 282 Query 108528 AACCATCACCTCTTGGCAAACAAGTTTGACCCGAGGGTGGATGATAACGTCCTGCAGTGC 108587 | || ||||||||||| |||||||| ||||| |||||| ||| || | ||||| Sbjct 281 CAGCACCACCTCTTGGCCAACAAGTTCGACCCCCTGGTGGACGATGCCGCAATCCAGTGT 222 Query 108588 TTAGAAGAGTACCTACGTCATAAGGCCATCTATGG 108622 | || ||| |||| || || | |||| |||| || Sbjct 221 CTCGAGGAGCACCTGCGCCACAGGGCCCTCTACGG 187 >seq180288 Length=5239 Score = 91.5 bits (100), Expect = 1e-13 Identities = 228/343 (66%), Gaps = 4/343 (1%) Strand=Plus/Minus Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747 || || || || ||||| ||| || || ||||| ||||| || ||||| || | || Sbjct 1317 CCTCTCAGCAATGAAGAAGCAGAATTTCCGATTGCTTACTCAATAGTGGTTTATCACAAA 1258 Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807 || || | |||| | || || || | | |||||||||||||| | ||||| | Sbjct 1257 ATAGAGATGCTTGATAGACTTCTAAGATCAATCTATGCCCCTCAGAATTTTTACTGCATT 1198 Query 107808 CACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGC 107867 || || || |||||| ||||| |||| | || || |||| || | || || Sbjct 1197 CATGTTGACAAGAAGTCTCCAGAATCTTTTTTTGCTGCTGTGAAGGGAATAGTCTCATGT 1138 Query 107868 TTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGA 107927 || |||||||| || |||| |||| | || || ||||| || ||| ||| Sbjct 1137 TTTGATAATGTCTTTATTTCCAGCCAGTTAGAGAGTGTTGTGTATGCTTCATGGAGCAGG 1078 Query 107928 GTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCA--TGGAAGT 107985 ||||| || ||| | ||||| ||| |||| | || |||| ||| | | ||||| | Sbjct 1077 GTGCAGGCAGACATTAACTGCATGAAAGA-TCTCTACAGA-AGAAGTTCAAACTGGAAAT 1020 Query 107986 ACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAA 108028 || || | || ||||| | ||||| || ||||||||||| Sbjct 1019 ACCTAATAAACCTCTGCGGCATGGACTTTCCTATAAAGACCAA 977 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346751190951330