Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Grus_20japonensis_20[genbank_20GCA_5F002002985.1_202017-02-10] 357,545 sequences; 1,265,634,512 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq22870 168 2e-36 seq833 113 1e-19 seq52800 111 4e-19 seq76856 89.7 1e-12 seq10463 84.2 5e-11 >seq22870 Length=13660 Score = 168 bits (186), Expect = 2e-36 Identities = 135/163 (83%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 78488 GCATTATGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCATC 78547 || ||||||||||||||| ||||||||||||| ||||| | ||||| | ||||||||| Sbjct 25 GCTTTATGGTGGTATTATGTCTCTAAAGGAATTGAATATTTGGATACAGTATTCTTCATC 84 Query 78548 CTACGAAAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGTTT 78607 || | ||||||||||| ||||||||||| || ||||| ||||| ||||| || ||||| Sbjct 85 CTGAGGAAGAAATTTAACCAAATTAGTTTCCTTCATGTCTATCACCATTTCACCATGTTC 144 Query 78608 ACTTTGGGATGGATAGGTATTAAATGGTTCGCAGGAGGACAAG 78650 || ||| | ||||| |||||||| ||| | ||||| ||||||| Sbjct 145 ACCTTGTGGTGGATTGGTATTAAGTGGGTTGCAGGTGGACAAG 187 >seq833 Length=14924 Score = 113 bits (124), Expect = 1e-19 Identities = 98/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 269138 GTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGG 269197 ||||| ||||| || || ||||| || ||||||||||| || ||||| ||||| |||||| Sbjct 5410 GTTGCCTTTGCTGCAGTTGAAGGCATCTTCTTTTCGGGTTCCTTTGCTGCTATATTTTGG 5351 Query 269198 TTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGAC 269257 ||||||| || ||||| ||||| ||| | |||||||| || ||| | || ||||| || Sbjct 5350 CTGAAGAAGAGGGGCCTGATGCCTGGACTGACTTTCTCCAATGAACTTATTAGCAGAGAT 5291 Query 269258 GA 269259 || Sbjct 5290 GA 5289 >seq52800 Length=5892 Score = 111 bits (122), Expect = 4e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 269126 GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCC 269185 |||||| | |||| |||||||| || || ||||| || |||||||| || |||||||| Sbjct 369 GGAGAACGTGTAGTAGCTTTTGCAGCAGTGGAAGGAATCTTCTTTTCTGGCTCTTTTGCA 428 Query 269186 GCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTG 269245 | || |||||| ||||||||||||| | ||||| ||| | ||||| ||||| ||| | Sbjct 429 TCAATTTTTTGGCTGAAGAAAAGAGGATTAATGCCTGGACTCACTTTTTCTAATGAACTC 488 Query 269246 ATAAGCAGGGACGA 269259 || || || ||||| Sbjct 489 ATCAGTAGAGACGA 502 >seq76856 Length=2926 Score = 89.7 bits (98), Expect = 1e-12 Identities = 93/121 (77%), Gaps = 1/121 (1%) Strand=Plus/Minus Query 268897 TCTAG-TAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGAT 268955 ||||| | ||| |||| ||||||| |||||||| | ||||| | ||||| || || | Sbjct 1788 TCTAGGTGGAGCGGTTCAGTCAAGAAGTACAGATCACAGAAGCTCGTTGTTTCTATGGCT 1729 Query 268956 TCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATA 269015 ||||||| || || ||||| || |||||||| ||||||||||| | || || || || | Sbjct 1728 TCCAGATTGCCATGGAAAACATACATTCAGAAATGTACAGTCTTCTTATTGACACCTACA 1669 Query 269016 T 269016 | Sbjct 1668 T 1668 >seq10463 Length=44968 Score = 84.2 bits (92), Expect = 5e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 104370 CTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAA 104429 |||| |||||||| |||||||| || || | || |||||||| || || |||||||||| Sbjct 439 CTTTTTGAATATTGTAGTCAGACAGCGTGCGTCCATCTTCTAGCTGCTTACCAGCAAAAA 380 Query 104430 TTAGCCTCTGTTGATCAGGAGGTATTCCT 104458 | || | ||| ||||||||||| || ||| Sbjct 379 TCAGTCGCTGCTGATCAGGAGGAATGCCT 351 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1146123791756860