Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Grus_20japonensis_20[genbank_20GCA_5F002002985.1_202017-02-10] 357,545 sequences; 1,265,634,512 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq833 132 6e-26 seq52800 120 4e-22 seq76856 104 3e-17 seq15833 96.9 4e-15 >seq833 Length=14924 Score = 132 bits (146), Expect = 6e-26 Identities = 111/136 (82%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||| ||||| ||||| ||||| ||||| || || ||||| ||||| ||||| | ||| | Sbjct 5287 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCT 5346 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | ||||||||||| | ||| || || || ||||||||||| ||||| ||||||||||||| Sbjct 5347 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGG 5406 Query 33446 CAATAAGTCTCTCTCC 33461 ||| | |||||| || Sbjct 5407 CAACCACTCTCTCACC 5422 Score = 87.8 bits (96), Expect = 2e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 33686 CCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAA 33745 |||| |||||||| || ||||| ||||||||||||||||| |||| ||||| |||| Sbjct 10078 CCAAGTTTTCATTTACAATTCCATCACTGGCTGCAAAAAAGGCCAGAACATGAGAGATAA 10137 Query 33746 AATATTTTTCGTCTGGTGTTAGTTTATTCCAAT 33778 | |||||||| |||| | | || || ||||||| Sbjct 10138 AGTATTTTTCATCTGCTTTCAGCTTGTTCCAAT 10170 >seq52800 Length=5892 Score = 120 bits (132), Expect = 4e-22 Identities = 99/121 (82%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 ||||||||||||| || ||||| || ||||| |||||||| ||||||| || | || | Sbjct 504 CCTCGTCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 445 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | |||||||| || || || || || |||||||||||||||||||| ||||| ||||| | Sbjct 444 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAG 385 Query 33446 C 33446 | Sbjct 384 C 384 Score = 86.0 bits (94), Expect = 8e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 32998 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCT 33057 ||||| |||||||| | || |||||||| || || ||||| || ||||| || || ||| Sbjct 1801 GACATGACTCCCATCCTCTGATATTCACCTACTCGCTTTTCAAAGAAATTGGTCTTGCCT 1742 Query 33058 TCCAATGATATATTTTCCATGAAATCAAACGGATT 33092 |||| || || ||||||||||| ||||| ||||| Sbjct 1741 TCCAGAGAGATGTTTTCCATGAAGTCAAAAGGATT 1707 >seq76856 Length=2926 Score = 104 bits (114), Expect = 3e-17 Identities = 102/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 33556 TCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTT 33615 || ||| |||||||| || || || || | |||||| |||||||| ||||| |||||| Sbjct 1653 TCTTTAGAATCTTTAATGTAGGTGTCAATAAGAAGACTGTACATTTCTGAATGTATGTTT 1712 Query 33616 TCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAA 33675 || ||||| ||||| || || |||||||| | ||| || || |||||||||||| || Sbjct 1713 TCCATGGCAATCTGGAAGCCATAGAAACAACGAGCTTCTGTGATCTGTACTTCTTGACTG 1772 Query 33676 AATCGTTCCGCC 33687 || || ||| || Sbjct 1773 AACCGCTCCACC 1784 >seq15833 Length=18383 Score = 96.9 bits (106), Expect = 4e-15 Identities = 111/147 (76%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 63216 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGT 63275 ||||| ||||| ||||||||||||||||| || || | || || ||||||| || || Sbjct 9657 ACTCGCTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAAAGGTCTCTGGCTCGCTGC 9716 Query 63276 TCCTCGTTTCCTGTATTCTT-TTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 63334 ||||| || || || ||||| |||||| || || ||| | | || || ||||||| || Sbjct 9717 TCCTCTTTCCCAGTGTTCTTCTTTAAG-TCAAGAAACTCAAAGATGTCCAAATGCCATGG 9775 Query 63335 TTCCAAGTATATGGCCATAACTCCAGG 63361 |||| ||| ||||| | | | ||||| Sbjct 9776 CTCCAGGTAGATGGCAAAAGCCCCAGG 9802 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620163054292200