Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Grus_20japonensis_20[genbank_20GCA_5F002002985.1_202017-02-10] 357,545 sequences; 1,265,634,512 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq833 120 4e-22 seq52800 114 2e-20 seq76856 98.7 1e-15 seq15833 96.9 4e-15 >seq833 Length=14924 Score = 120 bits (132), Expect = 4e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742 |||| ||||| ||||| | ||| ||||| || || ||||| ||||| ||||| | ||| | Sbjct 5287 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCT 5346 Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802 | ||||||||||| | ||||| || || |||||||| || ||||| ||||| ||||||| Sbjct 5347 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGG 5406 Query 32803 CAATAAGTCTCTCTCC 32818 ||| | |||||| || Sbjct 5407 CAACCACTCTCTCACC 5422 Score = 84.2 bits (92), Expect = 3e-11 Identities = 73/91 (80%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 33045 AAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAA 33104 || |||||||| || ||||| ||||||||||||||||| |||| ||||| ||||| Sbjct 10080 AAGTTTTCATTTACAATTCCATCACTGGCTGCAAAAAAGGCCAGAACATGAGAGATAAAG 10139 Query 33105 TATTTTTCGTCTGGTGTTAGTTTATTCCAAT 33135 |||||||| |||| | | || || ||||||| Sbjct 10140 TATTTTTCATCTGCTTTCAGCTTGTTCCAAT 10170 >seq52800 Length=5892 Score = 114 bits (126), Expect = 2e-20 Identities = 98/121 (81%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742 ||||||||||||| || | ||| || ||||| |||||||| ||||||| || | || | Sbjct 504 CCTCGTCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 445 Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802 | |||||||| || || ||||| || ||||||||||| |||||||| ||||| ||||| | Sbjct 444 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAG 385 Query 32803 C 32803 | Sbjct 384 C 384 Score = 82.4 bits (90), Expect = 1e-10 Identities = 103/140 (74%), Gaps = 5/140 (4%) Strand=Plus/Minus Query 32314 TTTAAAAGTCAACATCTAGAGAAAAATGATTGTCTT----CTTGAGACATAACTCCCATT 32369 ||||||| ||| |||| || | ||| |||||| ||| ||||| |||||||| Sbjct 1845 TTTAAAATTCAGCATCCAGGGTAAAGGAGTTGTCTGTGGGCTTC-GACATGACTCCCATC 1787 Query 32370 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTT 32429 | || |||||||| || || ||||| || ||||| || || ||||| | || || ||| Sbjct 1786 CTCTGATATTCACCTACTCGCTTTTCAAAGAAATTGGTCTTGCCTTCCAGAGAGATGTTT 1727 Query 32430 TCCATGAAATCGAATGGATT 32449 |||||||| || || ||||| Sbjct 1726 TCCATGAAGTCAAAAGGATT 1707 >seq76856 Length=2926 Score = 98.7 bits (108), Expect = 1e-15 Identities = 90/114 (79%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 32913 TCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTT 32972 || ||| |||||||| || || ||||| | |||||| |||||||| ||||| |||||| Sbjct 1653 TCTTTAGAATCTTTAATGTAGGTGTCAATAAGAAGACTGTACATTTCTGAATGTATGTTT 1712 Query 32973 TCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCT 33026 || ||||| || || || || ||||| || | ||| || || |||||||||||| Sbjct 1713 TCCATGGCAATCTGGAAGCCATAGAAACAACGAGCTTCTGTGATCTGTACTTCT 1766 >seq15833 Length=18383 Score = 96.9 bits (106), Expect = 4e-15 Identities = 111/147 (76%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 63071 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGT 63130 ||||| ||||| ||||||||||||||||| || || | || || ||||||| || || Sbjct 9657 ACTCGCTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAAAGGTCTCTGGCTCGCTGC 9716 Query 63131 TCCTCGTTTCCTGTATTCTT-TTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 63189 ||||| || || || ||||| |||||| || || ||| | | || || ||||||| || Sbjct 9717 TCCTCTTTCCCAGTGTTCTTCTTTAAG-TCAAGAAACTCAAAGATGTCCAAATGCCATGG 9775 Query 63190 TTCCAAGTATATGGCCATAACTCCAGG 63216 |||| ||| ||||| | | | ||||| Sbjct 9776 CTCCAGGTAGATGGCAAAAGCCCCAGG 9802 Score = 87.8 bits (96), Expect = 2e-12 Identities = 119/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 63810 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 63869 |||| |||| ||| || ||||||||||| | ||| || || || || || || || |||| Sbjct 15658 CACTGAATACTTTCTTAGTTTCTTTGTGCAAATTGGACACTGCAATCCTCGCTGCCAGAA 15717 Query 63870 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 63929 | || || || || |||| || || || || || |||| || ||||| || |||| Sbjct 15718 TAGCGTAGTCAGGGTGTTTGGTGGTCAGGGTTGCAGCCGTTTCAGCAGCCAGCGTATCCA 15777 Query 63930 ATTCTACCGTTGTTACACCATTATATATTCCTTGGATAACCTTCAT 63975 ||| ||||| || |||||| | || | || || || || ||||| Sbjct 15778 GTTCCACCGTCGTGACACCACTGTACAGCCCCTGAATCACTTTCAT 15823 Score = 84.2 bits (92), Expect = 3e-11 Identities = 138/199 (69%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 62430 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 62489 ||||||| || || ||||||| || || || |||||||| || || || || ||||||| Sbjct 5976 CATATGTTTCATACGGTCCTTGCTCCTTGGCAAGTTCACAGCTGGCTTCCAAAGCACCGT 6035 Query 62490 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCAAATGGAT 62549 |||||||||| || || |||| || || | || || || | || ||||| || | Sbjct 6036 AATAAATGGTCTCAAAAATCTGCTGGTTCAAGCGCTGGGCCTCAGGACTTTCAAAGGGGT 6095 Query 62550 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 62609 | | | | || || || ||||| | || || |||||||| || || || | ||| | Sbjct 6096 ACCTCATCAAGATGAAAGCATCTGCCAGGCCCTGCACACCAATGCCAATGGGACGATGGC 6155 Query 62610 TCTTATTAGAGATTTCAGC 62628 | || ||| |||||| Sbjct 6156 GTCTGTTGGAGCGTTCAGC 6174 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 630800100582000