Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Grus_20japonensis_20[genbank_20GCA_5F002002985.1_202017-02-10] 357,545 sequences; 1,265,634,512 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq57431 156 6e-33 seq57430 156 6e-33 seq1283 98.7 1e-15 >seq57431 Length=8435 Score = 156 bits (172), Expect = 6e-33 Identities = 212/296 (72%), Gaps = 0/296 (0%) Strand=Plus/Minus Query 8880 GGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGG 8939 |||| || | || ||||| || ||||| ||| || ||||| ||| | || |||| Sbjct 5609 GGAAAGCAGTGAAAGGACAGCCTTTCACGTTGTTGCAGATGAGCTTCTGTAAGGAGGCGG 5550 Query 8940 TTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGG 8999 | || | || || || || || | || ||||||||||| || ||||||||| | |||| Sbjct 5549 TATTAATTATTTCAAAGCCCACTTTTCCACCGAAGGTGCTTGGCTTCCAGTACTCAGGGG 5490 Query 9000 AGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGC 9059 ||||||| | || |||| || ||||||| ||| |||||||| || | ||| | || Sbjct 5489 AGCAGATTGCATTTCCCATCAGTCCTTTCAGGGAGAACGGAGCTCCAATCTCCACCATTG 5430 Query 9060 TCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGA 9119 | ||||| ||||||||||| || || || || || |||| || ||| | || || || | Sbjct 5429 TTTCACCAAAGATGGCACCTGGTCGTGGCTTCTCTACGAGGAGGCCCGGATACAGCTCCA 5370 Query 9120 CAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 ||| |||| ||| ||||| || |||||| || || || || || || || ||| Sbjct 5369 TAGCATCGATGTCTCCATAAAGCTCTTCCAGTTCAGCTGCCATTTCTTTTTCTCCT 5314 Score = 136 bits (150), Expect = 6e-27 Identities = 170/233 (73%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 9736 GTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGAACATCGCAG 9795 || ||||| || | |||||| ||| |||| || || || || ||||| || | || ||| Sbjct 3557 GTTGTTTGGAAGAGCTGCTCATCATCCCACTCTGGATGCTCCTGTTTCAGGATGTCACAG 3498 Query 9796 ACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGCACTAAACCA 9855 |||| ||||||||| ||||||||||| || || |||||||| || || || || |||||| Sbjct 3497 ACCCGGTTGTGTTCCCTCAGCCATATTGTAGCATACATCATCAAGCCTGGGACCAAACCA 3438 Query 9856 AACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCATACAGCATA 9915 ||||| || | ||| || | ||| ||| | || || || | || | || | ||| Sbjct 3437 AACACCTCCTGCCCGACCGAAAACTGCAAGTGTTCAGGTACGTGAGGAGGGTAGATCATC 3378 Query 9916 TGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAATAACCTG 9968 | |||| || || || || || || ||||||||||| || ||||| | ||| Sbjct 3377 TCTGCCTGAGTGTCCTTCACAGTTGGTGGATACATTTCTCCATCAATTATCTG 3325 Score = 102 bits (112), Expect = 1e-16 Identities = 143/199 (72%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 9493 ATGGAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAATCA 9552 || || |||||||| | ||| || | | || |||| | |||| ||| | ||| Sbjct 4793 ATAGAGTTGTTGTAGAGGAACTGCTGGAAAGTGTACTCCTGGTCGTGTATCTGGAAAGTG 4734 Query 9553 TCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGG 9612 ||||||| || | |||||| |||| || || ||||| ||||| || |||||||||||| Sbjct 4733 TCAGGCAGAAGCGGGTGCCAGTGGTATAGAGTGTTGAATTCGGCTGCAATTCGGTTCTGG 4674 Query 9613 TACTGAAA--GGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACC 9670 |||||||| | ||| |||||| | ||| || ||||| | || | ||||||||| | Sbjct 4673 TACTGAAATCGCTGGT--TGAACAGCAGCTCAGGATCAAACTTGAGTTTGAAGTGGTAGC 4616 Query 9671 CGCTGAGTTGCTGGACATA 9689 | || | ||||| ||||| Sbjct 4615 CACTTAAGTGCTGCACATA 4597 Score = 84.2 bits (92), Expect = 3e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 10840 CTTACGGGTCGAACAGTGCCGATCATAAAACCCCGTCCGCGTACAATCGCACCAATAACG 10899 |||||| || | ||||| ||||| |||| |||| |||||||| || ||| | Sbjct 821 CTTACGTGTTGTACAGTTTTCCCCATAATACCCTGTCCTTGTACAATCACATTCATACTG 762 Query 10900 ATCAAACCCCACCGTCATGCATACCCCTCGATTCTGGCACGGGTGCGAACAGCAAGGGTT 10959 |||||| || ||||||||||| |||| ||||| || |||| || ||||||||||| Sbjct 761 ATCAAATCCTGTTGTCATGCATACTCCTCTGTTCTGACAGGGGTTTGAGCAGCAAGGGTT 702 Query 10960 GGCTGCAAT 10968 ||||| ||| Sbjct 701 GGCTGGAAT 693 >seq57430 Length=2243 Score = 156 bits (172), Expect = 6e-33 Identities = 212/296 (72%), Gaps = 0/296 (0%) Strand=Plus/Minus Query 8880 GGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGG 8939 |||| || | || ||||| || ||||| ||| || ||||| ||| | || |||| Sbjct 434 GGAAAGCAGTGAAAGGACAGCCTTTCACGTTGTTGCAGATGAGCTTCTGTAAGGAGGCGG 375 Query 8940 TTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGG 8999 | || | || || || || || | || ||||||||||| || ||||||||| | |||| Sbjct 374 TATTAATTATTTCAAAGCCCACTTTTCCACCGAAGGTGCTTGGCTTCCAGTACTCAGGGG 315 Query 9000 AGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGC 9059 ||||||| | || |||| || ||||||| ||| |||||||| || | ||| | || Sbjct 314 AGCAGATTGCATTTCCCATCAGTCCTTTCAGGGAGAACGGAGCTCCAATCTCCACCATTG 255 Query 9060 TCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGA 9119 | ||||| ||||||||||| || || || || || |||| || ||| | || || || | Sbjct 254 TTTCACCAAAGATGGCACCTGGTCGTGGCTTCTCTACGAGGAGGCCCGGATACAGCTCCA 195 Query 9120 CAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 ||| |||| ||| ||||| || |||||| || || || || || || || ||| Sbjct 194 TAGCATCGATGTCTCCATAAAGCTCTTCCAGTTCAGCTGCCATTTCTTTTTCTCCT 139 >seq1283 Length=5683 Score = 98.7 bits (108), Expect = 1e-15 Identities = 188/277 (68%), Gaps = 0/277 (0%) Strand=Plus/Plus Query 8902 CTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGGTTTTCACGATGTCTAAACCTAC 8961 |||||||||| || | ||| || || | ||| || || || || || || || Sbjct 1933 CTTCACATTGAGGCACACGAGCTTCTCAAGCGATGCTGTCTTAACTATCTCGAAGCCAGT 1992 Query 8962 GTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACGTTCGCCATGAG 9021 | || || || || ||||||||||||||| | || ||||||||| ||| | | || Sbjct 1993 TGCTCCACCAAATGTACTGGGTTTCCAGTACTCTGGAGAGCAGATGGGGTTTCCAAGAAG 2052 Query 9022 CCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAGATGGCACCGGG 9081 ||| |||| ||||||||| || || | ||| | ||||| ||||| || || || ||| Sbjct 2053 CCCCTTCAGGGAAAACGGGGCTCCGATCTCCACCATGCTTTCACCAAAAATACCATTGGG 2112 Query 9082 ACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACGTCGCCATAGAG 9141 | ||||| || | | ||||| || | || | ||| || | ||| ||||| || Sbjct 2113 TTGGGGTTTCTCAAGCAGCAAGCCCAGATAAAACTCCAGAGCATCAATGTCTCCATACAG 2172 Query 9142 GGCTTCCAACTCGGCAGCTATCTCCTTCTCACCTACA 9178 |||||| ||| || || |||| | ||| ||| || Sbjct 2173 CTCTTCCAGCTCTGCCGCCTTCTCTTCCTCTCCTGCA 2209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 720493433403000