Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Grus_20japonensis_20[genbank_20GCA_5F002002985.1_202017-02-10] 357,545 sequences; 1,265,634,512 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq151086 105 3e-17 seq81479 91.5 6e-13 >seq151086 Length=2859 Score = 105 bits (116), Expect = 3e-17 Identities = 339/521 (65%), Gaps = 9/521 (2%) Strand=Plus/Plus Query 451091 AACACAGTATATGATGCTAAACGTTTAATTGGCCGTATGTATGATGATGATACTGTACAA 451150 ||||| | | |||||| || ||| | |||||||| | ||||||||| ||| || || Sbjct 807 AACACCATCTTTGATGCCAAGCGTCTCATTGGCCGCAAGTATGATGACCCTACAGTGCAG 866 Query 451151 AAAGAGAAAAAATTCTTTTCTTATGATGTAGTAAATCAAAAAGGAAAGCCCTATATTCAA 451210 || | || || | | ||| || ||| | || |||||| | | ||| Sbjct 867 TCTGACATGAAGCACTGGCCCTTCCGTGTGGTGAATGAGGGTGGCAAGCCCAAGGTGCAA 926 Query 451211 GTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTT 451270 || | || || ||||| | ||||| || || || || || || ||||| ||| Sbjct 927 GTGGAGTACAAGGGTGAGATGAAAACCTTCTTCCCAGAGGAGATCAGCTCCATGGTCCTT 986 Query 451271 ACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGA-TGCAGTAAT 451329 || || ||||| || | || || ||| | || | | || | | || ||| || || Sbjct 987 ACCAAGATGAAGGAGATTGCTGAGGCCTATCTGGGG-CGCAAGGTGCAGAATGCTGTCAT 1045 Query 451330 TACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATAT 451389 || || || ||||| |||||||| | || || || || || |||||||| || || Sbjct 1046 CACCGTGCCTGCTTACTTCAATGACTCTCAGCGCCAGGCCACCAAAGATGCTGGCACCAT 1105 Query 451390 TGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGG 451449 |||| | ||||| | || ||||| || || || |||||||||||| |||| ||||| Sbjct 1106 CACTGGCCTTAATGTGATGCGTATTATCAACGAGCCCACAGCAGCTGCTATAGCCTATGG 1165 Query 451450 ACTAGGAAAATCAAAAGAA-----ACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGT 451504 || ||| || ||| | | | | ||| || ||| | | | ||||| || || Sbjct 1166 -CTTGGACAA-GAAAGGTACCCGGGCTGGAGAGAAGAATGTGCTGATCTTTGACTTGGGA 1223 Query 451505 GGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCA 451564 || || ||| ||| || | ||| | ||||| ||||| | ||||| || ||| | Sbjct 1224 GGGGGCACTTTCGATGTGTCCATCCTTACCATTGAGGATGGCATCTTTGAGGTGAAGTCC 1283 Query 451565 ACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAA 451605 || |||||| || ||||| || || || || |||| || Sbjct 1284 ACAGCTGGTGACACCCATCTGGGTGGGGAGGACTTTGACAA 1324 Score = 84.2 bits (92), Expect = 9e-11 Identities = 169/249 (68%), Gaps = 14/249 (6%) Strand=Plus/Plus Query 451892 ATTGATGAAATTGTGCTTGTAGGAGGTTCTACACGAATTCCTAAAATTCAAGATATGTT- 451950 ||| | || || ||||| || || || ||||| || || || || || ||| | || | Sbjct 1611 ATTCAGGAGATCGTGCTGGTGGGTGGCTCTACCCGTATCCCCAAGATCCAAAAGCTGCTA 1670 Query 451951 ---GTCTTCTTATTTTGGAGGAAAACAACTATGTAAGAGCGTAAATCCTGATGAAGCTGT 452007 | |||||| | || ||| | || |||||| | || |||||||| ||||| Sbjct 1671 CAGGACTTCTTCAAT----GGCAAAGAGCTCAACAAGAGCATCAACCCTGATGAGGCTGT 1726 Query 452008 TGCATATGGTGCTGCAGTTCAAGCAGCTATTCTAACAGGTTCAGATGA---TGAAAAATT 452064 ||| ||||| ||||| || ||||||||||| || | || ||| | ||| || | Sbjct 1727 TGCTTATGGCGCTGCTGTGCAAGCAGCTATCCTCATGGG---AGACAAGTCTGAGAATGT 1783 Query 452065 AGGAGATATTCTGTTAGTAGATGTAACACCTCTATCTCTTGGAGTTGAAACAGCTGGTGG 452124 ||| | ||| | | ||||| || ||||| || || || | || ||||||||||| Sbjct 1784 GCAGGATCTGCTGCTGTTGGATGTCACCCCTCTGTCCCTGGGCATCGAGACAGCTGGTGG 1843 Query 452125 AATGATGAC 452133 | ||||||| Sbjct 1844 AGTGATGAC 1852 >seq81479 Length=5653 Score = 91.5 bits (100), Expect = 6e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372 ||||| |||| || ||||||| || || |||||||||||||| || || || || || Sbjct 5002 GTTACCCATGCTGTTGTTACTGTGCCAGCCTATTTCAATGATGCTCAGCGTCAGGCTACA 4943 Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACC 451425 |||||||| || ||||||||| || ||||| | ||||||||||||| || Sbjct 4942 AAAGATGCTGGTACTATTGCTGGGTTGAATGTGATGAGAATTATTAATGAGCC 4890 Score = 86.0 bits (94), Expect = 2e-11 Identities = 84/108 (78%), Gaps = 3/108 (3%) Strand=Plus/Minus Query 451190 AAAGGAAAGCCCTATATTCAAGTAAATTATAAAGGTGAA---ACTAAAACTTTTGCTCCT 451246 |||| |||||| |||||||||| || | ||||| | || ||||| || |||||| Sbjct 5385 AAAGCCAAGCCCCATATTCAAGTTGATGTTGGAGGTGGACAGACAAAAACATTCGCTCCT 5326 Query 451247 GAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAA 451294 ||||||||||| ||||||| || || || ||||| ||||| |||||| Sbjct 5325 GAAGAAATTTCTGCTATGGTCCTGACAAAGATGAAGGAAACTGCAGAA 5278 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1966667544484860