Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Grus_20japonensis_20[genbank_20GCA_5F002002985.1_202017-02-10] 357,545 sequences; 1,265,634,512 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq151086 114 1e-19 >seq151086 Length=2859 Score = 114 bits (126), Expect = 1e-19 Identities = 894/1433 (62%), Gaps = 30/1433 (2%) Strand=Plus/Minus Query 517265 ACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTC 517324 ||||| || |||||||||||||| | ||||| ||||| || || || ||||| || | Sbjct 2083 ACATTCAGGATACCATTGGCATCGATGTCAAAAGTGACCTCGATCTGGGGGACTCCACGG 2024 Query 517325 TGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAAT 517384 | || || ||||| ||| | | ||| | ||||| || || || || || | Sbjct 2023 GGTGCCGGGGGGATGCCTGTTAGGTCAAACTTGCCCAGCAAGTTGTTGTCCTTCGTCATA 1964 Query 517385 TTTCGTTCACCCTCGAAAATTTGGAT-AGTA-ACTACAGTTTGATTATCTGAATAAGTTG 517442 | ||||||||| | | |||| || | ||| | | || || || || ||||| | Sbjct 1963 GCCCTCTCACCCTCGTACACCTGGACCAGGACACTGC--TCTGGTTGTCAGAGTAAGTGG 1906 Query 517443 TAAATACTCTGGATTT-TTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATA 517501 | || |||| ||| ||| ||||| || ||||| | | || | | |||||| Sbjct 1905 TGAAGG-TCTGAGTTTGTTTGGTGGGAATGGTGGTGTTACGCTTGATGAGAGCGGTCATC 1847 Query 517502 ATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTT 517561 | ||||| ||||| || | || || || ||||| |||||||| | || | | || Sbjct 1846 ACTCCACCAGCTGTCTCGATGCCCAGGGACAGAGGGGTGACATCCAACAGCAGCAGATCC 1787 Query 517562 TGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCA 517621 || | || ||| | | || | || ||||||||||| | |||||| ||||| ||| Sbjct 1786 TGCACATTCTCAGACTTGTCTCCCATGAGGATAGCTGCTTGCACAGCAGCGCCATAAGCA 1727 Query 517622 ACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGA 517681 ||||| |||||||| || | | | || || | ||| |||||||| || | || Sbjct 1726 ACAGCCTCATCAGGGTTGATGCTCTTGTTGAGCTCTTTGCCATTGAAGAAGTCCTGTAGC 1667 Query 517682 AGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGT 517741 || | | | ||| || ||||| | || || || || | || || || || | |||| Sbjct 1666 AGCTTTTGGATCTTGGGGATACGGGTAGAGCCACCCACCAGCACGATCTCCTGAATCTGT 1607 Query 517742 GATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCGCTCTAAAC 517801 || || || || | ||| | | || || || || || || | | || Sbjct 1606 CCCTTGTCTAGCTTGGCATCACGCAGGGCCTTCTCCACTGGCTCCAGGGTGCCACGGAAG 1547 Query 517802 AAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAA---GAGTGACATTATAA-TCAAT 517857 | || | | || || ||||| || | ||||| |||| || || ||||| Sbjct 1546 AGATCAGCATTGAGCTCCTCGAAGCGGGCACGAGTAATGGAAGTG----TAGAAGTCAAT 1491 Query 517858 TCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGA--AGATAGTGCACGT 517915 || || || | || |||| ||||| ||| ||| || ||||| || |||| || Sbjct 1490 ACCCTCAAAAAGGGAGTCAATCTCAATGCTAGCTTGTGTGGAAGAGCTGAGAGTG--CGC 1433 Query 517916 TTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATT--GATTCAAAT 517973 || || | ||||| ||||| | |||| | | || | ||| || | | | Sbjct 1432 TTTGCCCTCTCACAAGCTGTACGCAGTCGCCTCACTGC--TCGCTTGTTACCAGCAATGT 1375 Query 517974 CTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAAT 518033 | || | || | |||||| ||||| ||| | | || | || || ||||| | Sbjct 1374 CACGCTTGTGCTTACGCTTGAATTCTTCCACAAAGTGGTTCACCATGCGGTTGTCAAAGT 1315 Query 518034 CTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAA 518093 | || || |||| | || | || | || | | || | || | ||||| |||| Sbjct 1314 CCTCCCCACCCAGATGGGTGTCACCAGCTGTGGACTTCACCTCAAAGATGCCATCCTCAA 1255 Query 518094 GAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTT 518153 | | | | ||||| || || || |||| ||||| || || |||||| | | Sbjct 1254 TGGTAAGGATGGACACATCGAAAGTGCCCCCTCCCAAGTCAAAGATCAGCACATTCTTCT 1195 Query 518154 CTTTGTCTTGG------TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCAT 518207 || | || || || || | ||||| || | |||||| || || || || | Sbjct 1194 CTCCAGCCCGGGTACCTTTCTTGTCCAAGCCATAGGCTATAGCAGCTGCTGTGGGCTCGT 1135 Query 518208 TAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTT 518267 | ||||| | || |||||||| |||| || | || |||||||| ||||| || | | Sbjct 1134 TGATAATACGCATCACATTAAGGCCAGTGATGGTGCCAGCATCTTTGGTGGCCTGGCGCT 1075 Query 518268 GTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATAT 518327 | || || || || || ||||| || || || || |||| || | || | || Sbjct 1074 GAGAGTCATTGAAGTAAGCAGGCACGGTGATGACAGCATTCTGCACCTTGCGCCCCAGAT 1015 Query 518328 AAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGGAAT 518387 | || || | | ||||| || | | | ||| || || | ||| ||||| Sbjct 1014 AGGCCTCAGCAATCTCCTTCATCTTGGTAAGGACCATGGAGCTGATCTCCTCT-GGGAAG 956 Query 518388 ATTGCTTGGAT-TCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATA 518446 | | || || ||| | || |||| | | || || ||| |||| | Sbjct 955 AAGGTTTTCATCTCACCCTTGTACTCCACTTGCACCTTGGGCTTGCCACCCTCATTCACC 896 Query 518447 ACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCA 518506 || || ||||||| ||||| || || || || | |||||| | | | | ||| Sbjct 895 ACACGGAAGGGCCAGTGCTTCATGTCAGACTGCACTGTAGGGTCATCATACTTGCGGCCA 836 Query 518507 ATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCT 518566 || | || || |||||||| || || ||||| || || || || | || | ||||| Sbjct 835 ATGAGACGCTTGGCATCAAAGATGGTGTTGGTAGGGTTCATAGCCACCTGGTTCTTGGCA 776 Query 518567 GCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTA 518626 ||||| ||||| ||| | ||||| || || || | ||||| || || ||||| || Sbjct 775 GCATCACCAATGAGACGCTCTGTATCGGTGAAGGCCACATAGCTGGGCGTGGTGCGGTTG 716 Query 518627 CCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACA 518679 || || ||||| || || || || ||||| |||| || | ||||| || || Sbjct 715 CCCTGGTCATTGGCGATGATCTCCACTTTGCCATGCTGGAAGACACCCACGCA 663 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3763079839346770