Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Grus_20japonensis_20[genbank_20GCA_5F002002985.1_202017-02-10] 357,545 sequences; 1,265,634,512 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq52800 132 5e-26 seq833 105 7e-18 seq15833 91.5 2e-13 seq76856 86.0 7e-12 >seq52800 Length=5892 Score = 132 bits (146), Expect = 5e-26 Identities = 111/136 (82%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 ||||||||||||| || | |||||||||||| || | |||||||| | ||||||||| | Sbjct 504 CCTCGTCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 445 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | ||| || || || ||||| || ||||||||||| || ||||| ||||||||||||| Sbjct 444 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAG 385 Query 19103 CAACTAGTCTTTCTCC 19118 | |||| | |||||| Sbjct 384 CTACTACACGTTCTCC 369 >seq833 Length=14924 Score = 105 bits (116), Expect = 7e-18 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| ||||| || || | |||||| || || || | ||||||||||| || || || | Sbjct 5287 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCT 5346 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | ||| ||||||| |||||| || || |||||||| || ||||| ||||| ||||| | Sbjct 5347 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGG 5406 Query 19103 CAACTAGTCTTTCTCC 19118 |||| | ||| || || Sbjct 5407 CAACCACTCTCTCACC 5422 >seq15833 Length=18383 Score = 91.5 bits (100), Expect = 2e-13 Identities = 111/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 47902 CAGCTACCTCATTTGGATTAGTATATTGTATTATTTCAGCACATAGATTACCACATTTGA 47961 || ||||||||| | | ||||| | | |||||| | ||||||||| | ||||||| Sbjct 8294 CACCTACCTCATCTTTGCTGGTATACTCCACTATTTCTGTACATAGATTGCTGCATTTGA 8353 Query 47962 TAGTACCCAAATTTTGATGATTATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAG 48021 | || ||||| || || ||||| | ||| || | ||| ||||| ||||| | | Sbjct 8354 TGGTCCCCAAGTTCTGCTGATTGCTCTTCCGGTTGCAAGAGTCTTTGTACAGCATGTACG 8413 Query 48022 GTGTTCCAGTTTCTATCTGAGATTCAATGATAG 48054 | || || || ||| |||||||||||||||||| Sbjct 8414 GCGTGCCGGTCTCTGTCTGAGATTCAATGATAG 8446 >seq76856 Length=2926 Score = 86.0 bits (94), Expect = 7e-12 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 19224 ATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGC 19283 |||||||| || | || || | | |||||||||||||||||| || ||||| || || Sbjct 1661 ATCTTTAATGTAGGTGTCAATAAGAAGACTGTACATTTCTGAATGTATGTTTTCCATGGC 1720 Query 19284 CATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTC 19328 ||||| || || || ||||| | |||||||| ||||||||||| Sbjct 1721 AATCTGGAAGCCATAGAAACAACGAGCTTCTGTGATCTGTACTTC 1765 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559596560113800