Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Grus_20japonensis_20[genbank_20GCA_5F002002985.1_202017-02-10] 357,545 sequences; 1,265,634,512 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq75740 107 2e-17 seq10749 86.0 5e-11 >seq75740 Length=3125 Score = 107 bits (118), Expect = 2e-17 Identities = 112/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450 ||||| | || ||| | ||||| ||||| || || ||||| || || ||||| || || Sbjct 1880 GTTACTAACGCTGTAGTGACTGTGCCAGCCTACTTCAATGATTCTCAGCGTCAGGCAACA 1821 Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCT 550510 |||||||||||| ||||| || || ||||| || || ||||||||||| || || ||| Sbjct 1820 AAAGATGCTGGAACCATTGCAGGGCTCAATGTACTGCGAATTATCAATGAGCCGACAGCT 1761 Query 550511 GCTGCACTTGCATATGGACTTGATAAA 550537 ||||| | || ||||| || || ||| Sbjct 1760 GCTGCGATAGCCTATGGTCTAGACAAA 1734 Score = 86.0 bits (94), Expect = 5e-11 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 552507 GGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCC 552566 |||||||| |||||||| | || ||||| || |||||||| || || ||||| |||||| Sbjct 170 GGTATTCCCCCTGCTCCCAGAGGTGTACCTCAGATTGAAGTAACCTTTGATATTGATGCC 111 Query 552567 AATGGAATTTTGAATGTGACTGCTTGTGATAA 552598 ||||| || |||||||| ||||| ||||| Sbjct 110 AATGGCATCCTGAATGTGTCTGCTGTGGATAA 79 >seq10749 Length=40418 Score = 86.0 bits (94), Expect = 5e-11 Identities = 152/222 (68%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 563253 CCTGAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGT 563312 ||| || || || |||||||| ||||| ||| || || ||||| |||| || || Sbjct 40059 CCTCAGGCGCAGCACAAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGT 40118 Query 563313 TCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCC 563372 | |||||| || || || || ||||| || || || ||||||||||| ||||| || Sbjct 40119 GCGGCCATCTTCCAGCTGCTTCCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCC 40178 Query 563373 TTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAG 563432 ||| || || || || || ||| || |||||| || ||| || | | ||||| Sbjct 40179 TTCCTTGTCCTGGATCTTGGCTTTCACGTTCTCAATGGTGTCACTGGGCTCAACCTCGAG 40238 Query 563433 AGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || | || || || || || || || || || || ||||| Sbjct 40239 GGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 40280 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4010387407872050