Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Grus_20japonensis_20[genbank_20GCA_5F002002985.1_202017-02-10] 357,545 sequences; 1,265,634,512 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq41976 116 3e-21 seq64392 96.9 3e-15 >seq41976 Length=14171 Score = 116 bits (128), Expect = 3e-21 Identities = 143/189 (76%), Gaps = 5/189 (3%) Strand=Plus/Plus Query 30150 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30209 ||| || |||| |||||||| || |||| ||||||||| || ||||| ||||||| || Sbjct 11740 CATATCTTTGTATTCTGCTCCAAAGTGCCGCCACTGGAAACCATACACTGGTCCCAAATC 11799 Query 30210 TCCCTCTTCCCTG-TGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 30268 ||||| || ||| | || ||| ||| ||| |||| || || | || || || || | Sbjct 11800 CCCCTCCTCTCTGGTACT-GAAACCCTGCTTATCCAGGAACTCACGTGATCCATTAGCAT 11858 Query 30269 CCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACC 30328 |||| |||||||| ||||| | ||||||||||| | ||||| || || || ||||| | Sbjct 11859 CCCAAATCTTTACACCCTTTGCAGAGAGCTCTTTAGCATTTGTAGAACC-CT-ACGAAAC 11916 Query 30329 ACAG-CAGC 30336 |||| |||| Sbjct 11917 ACAGACAGC 11925 >seq64392 Length=12286 Score = 96.9 bits (106), Expect = 3e-15 Identities = 86/108 (80%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 112102 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 112161 || |||||||||||||| |||| || || |||||| | | ||| | |||||| || || Sbjct 9211 TTGAGCTCCCTGCTGAGCACTATATTAATTCTGTCTTTTAAAGGACGATTCTTCTCAGGA 9270 Query 112162 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 112209 ||||||||||| |||||| |||||||||||| | ||||| || ||| Sbjct 9271 ATGGAGAACCAGGTCTTTTTACCCATTATCAGTGCATTCTGTTTACCT 9318 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406837016246285