Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Grus_20japonensis_20[genbank_20GCA_5F002002985.1_202017-02-10] 357,545 sequences; 1,265,634,512 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq151086 120 2e-21 seq75740 116 2e-20 seq10749 86.0 4e-11 >seq151086 Length=2859 Score = 120 bits (132), Expect = 2e-21 Identities = 360/551 (65%), Gaps = 6/551 (1%) Strand=Plus/Plus Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAA 474388 ||||| || || || || || || || ||| || || | ||| | || |||| ||| Sbjct 630 GCAATCGGCATCGACTTGGGCACCACGTACTCCTGCGTGGGTGTCTTCCAGCATGGCAAA 689 Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448 || || || || ||||||||||| || || | || || || ||||| | || || Sbjct 690 GTGGAGATCATCGCCAATGACCAGGGCAACCGCACCACGCCCAGCTATGTGGCCTTCACC 749 Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAAT 474508 || || || | ||| ||||| |||||||| || | || | || || ||| || Sbjct 750 GATACAGAGCGTCTCATTGGTGATGCTGCCAAGAACCAGGTGGCTATGAACCCTACCAAC 809 Query 474509 ACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCT 474568 || || |||||||| || | | ||||| || || | |||||| | || || || ||| Sbjct 810 ACCATCTTTGATGCCAAGCGTCTCATTGGCCGCAAGTATGATGACCCTACAGTGCAGTCT 869 Query 474569 GATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAA--G 474626 || ||| || ||||| || ||| | |||| ||||| || || | | || | Sbjct 870 GACATGAAGCACTGGCCCTTCCGTGTGGTGAATGAGGGTGGCAAGCCCAAGGTGCAAGTG 929 Query 474627 CAATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAG 474686 | |||| | ||||| | ||| || | || || | || || ||||| | Sbjct 930 GAGTACAAG--GGTGAGATGAAAACCTTCTTCCCAGAGGAGATCAGCTCCATGGTCCTTA 987 Query 474687 CCAAAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATT 474745 |||| ||||| | | || ||| | ||||| || | | || |||| || || Sbjct 988 CCAAGATGAAGGAGATTGCTGAG-GCCTATCTGGGGCGCAAGGTGCAGAATGCTGTCATC 1046 Query 474746 ACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATT 474805 || || || || || || ||||| ||||| || || || || |||||||| || | || Sbjct 1047 ACCGTGCCTGCTTACTTCAATGACTCTCAGCGCCAGGCCACCAAAGATGCTGGCACCATC 1106 Query 474806 GCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGT 474865 | || |||||||| | |||||||| || || || |||||||| || | || ||||| Sbjct 1107 ACTGGCCTTAATGTGATGCGTATTATCAACGAGCCCACAGCAGCTGCTATAGCCTATGGC 1166 Query 474866 CTTGATAAGAA 474876 | || ||||| Sbjct 1167 TTGGACAAGAA 1177 >seq75740 Length=3125 Score = 116 bits (128), Expect = 2e-20 Identities = 115/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 474728 GTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACT 474787 || ||| | || ||| | ||||| ||||| || || ||||||||||| ||||| ||||| Sbjct 1880 GTTACTAACGCTGTAGTGACTGTGCCAGCCTACTTCAATGATTCTCAGCGTCAGGCAACA 1821 Query 474788 AAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCA 474847 |||||||| |||| |||||||| || ||||| | || ||||| ||||| || ||||| Sbjct 1820 AAAGATGCTGGAACCATTGCAGGGCTCAATGTACTGCGAATTATCAATGAGCCGACAGCT 1761 Query 474848 GCCGCACTTGCTTATGGTCTTGATAAGAA 474876 || || | || |||||||| || || || Sbjct 1760 GCTGCGATAGCCTATGGTCTAGACAAAAA 1732 Score = 98.7 bits (108), Expect = 6e-15 Identities = 77/92 (84%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 476090 GGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCA 476149 |||||||| |||||||||||||| || ||||| |||||||| || |||||||||||||| Sbjct 170 GGTATTCCCCCTGCTCCCAGAGGTGTACCTCAGATTGAAGTAACCTTTGATATTGATGCC 111 Query 476150 AATGGTATTCTTAATGTTACTGCTTGTGATAA 476181 ||||| || || ||||| ||||| ||||| Sbjct 110 AATGGCATCCTGAATGTGTCTGCTGTGGATAA 79 >seq10749 Length=40418 Score = 86.0 bits (94), Expect = 4e-11 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 480555 AGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTG 480614 || || || |||||||| || || ||| || | || || |||| || || | | Sbjct 40063 AGGCGCAGCACAAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGG 40122 Query 480615 TTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCC 480674 |||||| || ||||| |||||||| || || | || |||||||| ||||| |||||| Sbjct 40123 CCATCTTCCAGCTGCTTCCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCC 40182 Query 480675 TTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTA 480734 ||||| || ||||| ||| || ||||| || ||| || | | || ||||| Sbjct 40183 TTGTCCTGGATCTTGGCTTTCACGTTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTG 40242 Query 480735 ATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || || || ||||| || || || || Sbjct 40243 ATGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTG 40277 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3252842360141660