Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Grus_20japonensis_20[genbank_20GCA_5F002002985.1_202017-02-10] 357,545 sequences; 1,265,634,512 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq180288 251 8e-62 seq251719 125 8e-24 seq251720 105 8e-18 >seq180288 Length=5239 Score = 251 bits (278), Expect = 8e-62 Identities = 606/910 (67%), Gaps = 8/910 (1%) Strand=Plus/Plus Query 160045 TGTGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATT 160104 ||||||||| || || |||| ||||| || || || |||||| || |||||| | Sbjct 392 TGTGTCGCAAATACTCTTCCAAACATTTCACTGCAAAAGGGTCAACATCAGTGTCGAACT 451 Query 160105 TATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACA 160164 |||| || || | ||||| ||| |||| ||||||| || |||||| ||| || | Sbjct 452 TATTAGCAAAAAAGTGGTG---GTTTCGTAGCATCCAGTTCAGGTCTCCCACCCCAAAAA 508 Query 160165 CGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGT 160224 | ||||| || || ||||| || || |||| || ||||| | || ||||| | ||| | Sbjct 509 CACAGACAGAGCGAATGTGAACTCCACTGCATGGTGGGTAGGGTGCACCTTTGGACACAT 568 Query 160225 CACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGT 160284 ||||||| ||||||||||||| |||||||| || | || | ||||||||| |||| Sbjct 569 CACCTTCAAAGTACTGCCACTTGACAAACCTTGCCAGTGCATTCATGTCGGAAACATCGT 628 Query 160285 ATTTGTACATCAG-GGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCAC 160343 | |||| || || | ||| ||||| || || | || || | ||| | || |||||| Sbjct 629 ACTTGT-CACTAGAAGAAACTGCACCTGGGACTTCAGGGATTCTCTGAATTGTTGCCCAC 687 Query 160344 AGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTG 160403 || | || || |||||||| ||||| || | ||| || ||||||| ||| ||| Sbjct 688 AGATACTCATCTGGGCTGTAAGTGTCTTTTGCCCACTCAATGAACTTAAGTATTTTGCTG 747 Query 160404 TCCCGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCC-GGAGAA 160462 | |||| || | |||| | || ||||| || || || || | | || Sbjct 748 CTTTCTAACACGTATTCTACAAATCTTCTGCTAACTACAAAATAGGCACTACCAGAAAAA 807 Query 160463 TATCGGTATGGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTTT 160522 || || | | ||| || | |||||| ||| || || | || | Sbjct 808 AATTGGAGTACTGAGAGGTGGTAGCTGTTTGTCTACACCCGTATTCTTTATTTTACCATC 867 Query 160523 CACCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTC 160582 | | | | || | || |||||||| || || | ||||| ||| || || Sbjct 868 AATAATCTCATGGTGTTTTTTCCACCTTACTTCTTTATAAACAGGCATTTTTTCTGTTTC 927 Query 160583 TAGACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAG 160642 | ||||| |||| | || | ||| | | || || || || |||| ||||| | Sbjct 928 CAAGCTGTTTTCACCTTTAAGAGCTTTTAATTTCTCTACTATTTCCTGGTTGGTCTTTAT 987 Query 160643 CGGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAG 160702 |||||||| | ||||| | |||||| | ||| ||||| || | || || || Sbjct 988 AGGAAAGTCCATGCCGCAGAGGTTTATTAGGTATTTCCAGTTTGAACTTCTTCTGTAGAG 1047 Query 160703 GTCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTC 160762 || ||||||| ||||| ||||||||||| | |||||| ||||| ||||| || |||| Sbjct 1048 ATCTTTCATGCAGTTAATGTCTGCCTGCACCCTGCTCCATGAAGCATACACAACACTCTC 1107 Query 160763 TAGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAGAAA 160822 || | |||| | |||||| ||||| ||||| || || |||||| ||| | ||| || Sbjct 1108 TAACTGGCTGGAAATAAAGACATTATCAAAACATGAGACTATTCCCTTCACAG-CAGCAA 1166 Query 160823 GAACATCTTAT-CCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGA 160881 || | || | | ||| ||| || || | ||| || | |||||||| || |||| Sbjct 1167 AAAAAGATTCTGGAGACTTCTTGTCAACATGAATGCAGTAAAAATTCTGAGGGGCATAGA 1226 Query 160882 TGGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTA 160941 | | || || | || || | ||||||||| || |||| | ||| || ||||| || | Sbjct 1227 TTGATCTTAGAAGTCTATCAAGCATCTCTATTTTGTGATAAACCACTATTGAGTAAGCAA 1286 Query 160942 TCGGAAACTC 160951 ||||||| || Sbjct 1287 TCGGAAATTC 1296 >seq251719 Length=519 Score = 125 bits (138), Expect = 8e-24 Identities = 225/326 (69%), Gaps = 7/326 (2%) Strand=Plus/Plus Query 160044 CTGTGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAAT 160103 ||||| ||||| || || || ||||| |||| ||| |||| || |||||| Sbjct 199 CTGTGGCGCAGGTGCTCCTCGAGACACTGGATTGCGGCATCGTCCACCAGGGGGTCGAAC 258 Query 160104 TTATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAAC 160163 || || || || || ||||| | ||| || |||||| ||||||| || |||| | Sbjct 259 TTGTTGGCCAAGAGGTGGTGC---TGCTGCAGCATCCAGGGCACGTCGCCCACCCCGTAG 315 Query 160164 ACGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACG 160223 | |||||||| || |||| |||| |||| || ||||| | || || || | Sbjct 316 ATGCAGACGGCGCGCTGGTGCTGGCCGGTGCAGGGTGGGTAGGGCGCCCCCTTGCTGGTG 375 Query 160224 TCACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTC--GGAGGTGT 160281 || || || ||||||||||||||| | | || | || | |||||| |||| || Sbjct 376 TCGCCCTCCAGGTACTGCCACTTCACCAGGCGGGGCAGGGCGTTCATGTCCGGGAGCTG- 434 Query 160282 CGTATTTGTACATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCC 160341 | | |||| || |||| | ||| || || ||||||||||| || | |||||||||| Sbjct 435 -GAACTTGTCGTTCTGGGGCATGGCGCCTGGCACGCCGGGCATGCGGTTGAGGGTGGCCC 493 Query 160342 ACAGGTGTTCGTCGGGGCTGTACGTG 160367 | | ||| ||||| |||||||| ||| Sbjct 494 AGACGTGCTCGTCAGGGCTGTAGGTG 519 >seq251720 Length=1010 Score = 105 bits (116), Expect = 8e-18 Identities = 186/270 (69%), Gaps = 1/270 (0%) Strand=Plus/Plus Query 160700 CAGGTCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTT 160759 ||||||| |||||| || | || ||||||| ||| |||||| || || || || || Sbjct 348 CAGGTCCTGCATGCAGTTGAGGTCGGCCTGCAGCCGGGACCAGGAGGCATAGACCACCTT 407 Query 160760 CTCTAGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAG 160819 || || || ||||||||||| || ||| || | ||||| || ||| ||| Sbjct 408 TTCCAGGCGGCTAGCCACAAAGACATTGGGGAAGCAAGCTACGATGGCCCGCACGGCCTC 467 Query 160820 AAAGAACATCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTA 160879 ||| | ||| | ||| | ||| ||||| || | ||||||||| ||||| Sbjct 468 CTGGAAGGCGGCCGGGGACTTGCTGTCAATGTGGACGCAGTAGATGTTCTGAGGGGCGTA 527 Query 160880 GATGGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGC 160939 | || || || | || |||||||||||| || || | ||||| || || |||||||| Sbjct 528 CAGGGACCGCAGGAGCCGCTCGAACATCTCGAT-TTGTTGTGGATGACCATGGAGTAGGC 586 Query 160940 TATCGGAAACTCGGTCTCCTCGCGACTCAG 160969 || || ||||| | |||||| ||||||| Sbjct 587 GATAGGGAACTCTGCCTCCTCCTGACTCAG 616 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 574639427014200