Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Grus_20japonensis_20[genbank_20GCA_5F002002985.1_202017-02-10] 357,545 sequences; 1,265,634,512 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq151086 378 9e-100 seq10749 188 9e-43 seq75740 179 5e-40 seq81479 113 6e-20 seq10463 98.7 1e-15 >seq151086 Length=2859 Score = 378 bits (418), Expect = 9e-100 Identities = 1042/1580 (66%), Gaps = 29/1580 (2%) Strand=Plus/Plus Query 195299 GCTATTGGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCGT 195358 || || || ||||| || || || || ||||| || || ||||| | || ||| Sbjct 630 GCAATCGGCATCGACTTGGGCACCACGTACTCCTGCGTGGGTGTCTTCCAGCATGGCAAA 689 Query 195359 GTAGAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACA 195418 || ||||| ||| | |||||||| || ||||| || || || || || ||||| || Sbjct 690 GTGGAGATCATCGCCAATGACCAGGGCAACCGCACCACGCCCAGCTATGTGGCCTTCACC 749 Query 195419 GATAATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAAT 195478 |||| || |||||| |||| ||||| || || || ||| ||||||||||||| ||| Sbjct 750 GATACAGAGCGTCTCATTGGTGATGCTGCCAAGAACCAGGTGGCTATGAACCCTACCAAC 809 Query 195479 ACTGTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGAC 195538 || ||||||| || |||||||| ||||| ||||||| | || | ||| || Sbjct 810 ACCATCTTTGATGCCAAGCGTCTCATTGGCCGCAAGTATGATGACCCTACAGTGCAGTCT 869 Query 195539 GATATAAAGGACTGGTCTTATGAAGTTGTTCCCGGTGTGGCTGATAAGCCTATGATTAAT 195598 || || ||| ||||| | | || || || || || ||||| | | | | Sbjct 870 GACATGAAGCACTGGCCCTTCCGTGTGGTGAA---TGAGGGTGGCAAGCCCAAGGTGCAA 926 Query 195599 GTTGAATTTCACGGTGAGAAGAAACAATTTGCTCCC-GAAGAAATTTCGTCTATGGTGTT 195657 || || | | ||||||| |||| | || |||| || || || || ||||| | Sbjct 927 GTGGAGTACAAGGGTGAGATGAAA-ACCTTCTTCCCAGAGGAGATCAGCTCCATGGTCCT 985 Query 195658 GATTAAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGT 195717 | ||||||||||||| ||| || | | |||| | ||| | |||| || | Sbjct 986 TACCAAGATGAAGGAGATTGCTGAGGCCTATCTGGGGCGCAAGGTGCAGAATGCTGTCAT 1045 Query 195718 GACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTAT 195777 || || ||||||||||||| ||| || || || ||||| || || || |||| | || Sbjct 1046 CACCGTGCCTGCTTACTTCAATGACTCTCAGCGCCAGGCCACCAAAGATGCTGGCACCAT 1105 Query 195778 TGCGGGTCTAAACTGTCTTA-GAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATG 195836 | || || || ||| | | |||||||| || || ||||| ||||| || || |||| Sbjct 1106 CACTGGCCTTAA-TGTGATGCGTATTATCAACGAGCCCACAGCAGCTGCTATAGCCTATG 1164 Query 195837 GTCTGGACAAGAA------CAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTG 195890 | |||||||||| | || | ||| || ||||| |||||||||| | || | Sbjct 1165 GCTTGGACAAGAAAGGTACCCGGGCTGGAGAGAAGAATGTGCTGATCTTTGACTTGGGAG 1224 Query 195891 GTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTA 195950 | || || || ||||| || | || | ||||| | ||| || || || || ||| | | Sbjct 1225 GGGGCACTTTCGATGTGTCCATCCTTACCATTGAGGATGGCATCTTTGAGGTGAAGTCCA 1284 Query 195951 CTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTCCGTCA-TTTG 196009 | |||||||| || ||||| ||||| || || || || || | | || |||| Sbjct 1285 CAGCTGGTGACACCCATCTGGGTGGGGAGGACTTTGACAACCGCATGGTGAACCACTTTG 1344 Query 196010 TCTGATGAGTTCCGTCGAAAGAATAAGAAAGATATTTCTGGAAATCCTAGGGCTCTTCGT 196069 | || || ||| || ||| | ||| || ||| |||| || | || | | Sbjct 1345 TG-GAAGAATTCAAGCGTAAGCACAAGCGTGACATTGCTGGTAACAAGCGAGCAGTGAGG 1403 Query 196070 CGGCTTAGGACTGCATGTGAACGTGCCAAACGAACTCTCTCTTCTACGGCTCAAACAATG 196129 || || | || || ||||| | || || || |||||| ||| | | ||| | | Sbjct 1404 CGACTGCGTACAGCTTGTGAGAGGGCAAAGCGCACTCTCAGCTCTTCCACACAAGCTAGC 1463 Query 196130 GTTGAGATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACCCGTGCACGT 196189 |||||||||| || | ||||| || ||||||||||| || | ||||| ||||| || Sbjct 1464 ATTGAGATTGACTCCCTTTTTGAGGGTATTGACTTCTACACTTCCATTACTCGTGCCCGC 1523 Query 196190 TTTGAAGAGTTAAACTCTGATTTGTTTAGGAAGTGTATGGAACCTGTTGAACAAGTACTT 196249 || || ||| | || ||||| | || | |||| || || || | | || Sbjct 1524 TTCGAGGAGCTCAATGCTGATCTCTTCCGTGGCACCCTGGAGCCAGTGGAGAAGGCCCTG 1583 Query 196250 CGTGACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGAGGATCAACC 196309 ||||| || ||| | || ||| || || | || || || || ||||| || || ||| Sbjct 1584 CGTGATGCCAAGCTAGACAAGGGACAGATTCAGGAGATCGTGCTGGTGGGTGGCTCTACC 1643 Query 196310 CGTATTCCGAAGATTCAACAGATGCTTTCTAGCTTCTTCAATAATAAAGATTTAAACAAA 196369 ||||| || ||||| ||| || |||| |||||||||| ||||| | ||||| Sbjct 1644 CGTATCCCCAAGATCCAAAAGCTGCTACAGGACTTCTTCAATGGCAAAGAGCTCAACAAG 1703 Query 196370 ACGATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCTCTCA 196429 | |||||||| ||||| || ||||||||||| || || || || || ||||| |||| Sbjct 1704 AGCATCAACCCTGATGAGGCTGTTGCTTATGGCGCTGCTGTGCAAGCAGCTAT--CCTCA 1761 Query 196430 GGTGTTGACAA---TAATAACGTCCAAGATCTTCTGCTACTTGATGTTGCACCCGTATCC 196486 | | ||||| | | || || || ||||| ||||| | ||||| | || | ||| Sbjct 1762 TG-GGAGACAAGTCTGAGAATGTGCAGGATCTGCTGCTGTTGGATGTCACCCCTCTGTCC 1820 Query 196487 CTGGGTCTTGAAACAGCGGGTGGTGTTATGACTAAAATTATTGATAGGAACACAACTATT 196546 ||||| | || ||||| ||||| || ||||| | || | | ||||| || ||| Sbjct 1821 CTGGGCATCGAGACAGCTGGTGGAGTGATGACCGCTCTCATCAAGCGTAACACCACCATT 1880 Query 196547 CCGACTAAGAAGGAACAAGTCTTTTCAACGTATTCCGATAATCA-ACCAGGTGTTCATAT 196605 || || || | || ||| | || || || || || || | || |||| | | Sbjct 1881 CCCACCAAACAAACTCAGACCTTCACCACTTACTCTGACAACCAGAGCA-GTGTCCTGGT 1939 Query 196606 TCAAGTATATGAAG--GAGAACGCTCCCGTG-CAAAGGATAACCATCTACTTGGAACTTT 196662 || || || || | |||| ||| || | ||||| ||| | | || || | || Sbjct 1940 CCAGGTGTACGAGGGTGAGAGGGCT---ATGACGAAGGACAACAACTTGCTGGGCAAGTT 1996 Query 196663 CGATTTGACGGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCTTCGA 196722 || | || || || || | |||||| | || || || ||||| | || || || Sbjct 1997 TGACCTAACAGGCATCCCCCCGGCACCCCGTGGAGTCCCCCAGATCGAGGTCACTTTTGA 2056 Query 196723 TATAGACGCAAATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAATCTGA 196782 || || || ||||| || || || |||| |||| ||||||| | || || | Sbjct 2057 CATCGATGCCAATGGTATCCTGAATGTCAGCGCTGTGGACAAGAGCACGGGTAAGGAGAA 2116 Query 196783 AAAGATTGTGATTACCAATGACAAGGGGCGGCTTTCTAAGGAGGAAATTGAACGTATGGT 196842 ||||| || |||||||||||||| || ||| ||||| || ||||| |||||||| Sbjct 2117 CAAGATCACTATCACCAATGACAAGGGTCGCCTTAGCAAGGATGACATTGACCGTATGGT 2176 Query 196843 TCAAGATGCGGAAAAGTACA 196862 ||||| || || || |||| Sbjct 2177 GCAAGAAGCAGAGAAATACA 2196 >seq10749 Length=40418 Score = 188 bits (208), Expect = 9e-43 Identities = 178/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||||||||| ||||| || || || || |||||||||||||||||| | Sbjct 40280 ATGCAGATCTTTGTGAAGACCCTGACAGGCAAGACCATCACCCTCGAGGTTGAGCCCAGT 40221 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| || || ||| | ||||||||||| || || |||||||||||||| || |||||| Sbjct 40220 GACACCATTGAGAACGTGAAAGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGATCAG 40161 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || | || || |||||||| || ||||| |||||||| || ||||| |||| |||||| Sbjct 40160 CAGAGGCTGATCTTTGCTGGGAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAAC 40101 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGG 172088 | || ||||| || || || || ||||| || | || ||||||| Sbjct 40100 ATCCAGAAGGAATCCACCCTGCATCTTGTGCTGCGCCTGAGGGGTGG 40054 Score = 87.8 bits (96), Expect = 2e-12 Identities = 92/120 (77%), Gaps = 1/120 (1%) Strand=Plus/Minus Query 171955 GATAAGGAAGGC-ATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGA 172013 || ||||||| | ||||| ||||||||||| | | || || ||||| || ||||| || Sbjct 40416 GACAAGGAAGTCCATTCCCCCCGATCAGCAGAGGTTGATCTTCGCTGGCAAGCAGCTGGA 40357 Query 172014 AGATGGACGTACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCT 172073 |||||| || ||||| | || |||||| | || ||||| || ||||| || ||||| || Sbjct 40356 AGATGGGCGCACCCTGTCCGACTACAACATCCAGAAGGAATCCACTCTGCATCTTGTGCT 40297 >seq75740 Length=3125 Score = 179 bits (198), Expect = 5e-40 Identities = 360/531 (68%), Gaps = 2/531 (0%) Strand=Plus/Minus Query 195875 ATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATA 195934 |||||||| || || ||||| || |||||||| ||| |||| | |||||||| ||| || Sbjct 1604 ATCTTTGACCTTGGAGGTGGCACCTTTGATGTGTCAATTCTGACTATTGAAGATGGCATC 1545 Query 195935 TTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGATGCACGT 195994 || || || || | ||||| ||||| ||||| | ||||| ||||| || || || Sbjct 1544 TTTGAGGTGAAATCCACTGCAGGTGACACTCACTTGGGTGGAGAAGACTTTGACAACCGC 1485 Query 195995 CTTCTCCGTCATTTGTCTGATGAGTTCCGTCGAAAGAATAAGAAAGATATTTCTGGAAAT 196054 | || || || | ||| ||| || ||| | |||||||| || | || Sbjct 1484 ATGGTCAACCACTTCATCGCTGAATTCAAGCGCAAGCACAAGAAAGACATCAGCGAGAAC 1425 Query 196055 CCTAGGGCTCTTCGTCGGCTTAGGACTGCATGTGAACGTGCCAAACGAACTCTCTCTTCT 196114 || || |||| || || | ||||| || || ||||| || || ||||| || ||| Sbjct 1424 AAGAGAGCAGTTCGCCGCCTCCGCACTGCCTGCGAGCGTGCAAAGCGCACTCTGTCGTCT 1365 Query 196115 ACGGCTCAAACAATGGTTGAGATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACT 196174 | | || | | |||| |||||||| | | ||| || ||||||||||| ||| | Sbjct 1364 AGCACGCAGGCCAGTATTGAAATTGATTCTCTCTATGAGGGTATTGACTTCTACACATCC 1305 Query 196175 ATTACCCGTGCACGTTTTGAAGAGTTAAACTCTGATTTGTTTAGGAAGTGTATGGAACCT 196234 |||||| | || || ||||||||| | ||| | || |||| | |||| ||| Sbjct 1304 ATTACCAGAGCTCGCTTTGAAGAGCTGAACGCCGACCTGTTCCGTGGCACCCTGGATCCT 1245 Query 196235 GTTGAACAAGTACTTCGTGACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTT 196294 || ||| | | || || || || ||| | || || || || | | || || || || Sbjct 1244 GTGGAAAAGGCCCTGCGGGATGCCAAGCTCGACAAATCGCAGATCCACGACATCGTGCTG 1185 Query 196295 GTGGGAGGATCAACCCGTATTCCGAAGATTCAACAGATGCTTTCTAG-CTTCTTCAATAA 196353 || || || || || ||||| || |||||||| | ||| | | || ||||||||| Sbjct 1184 GTTGGTGGGTCTACTCGTATCCCAAAGATTCAGAAACTGC-TGCAAGATTTCTTCAATGG 1126 Query 196354 TAAAGATTTAAACAAAACGATCAACCCGGATGAAGCAGTTGCTTATGGTGC 196404 ||||| | ||||| | ||||| || ||||| || || ||||||||||| Sbjct 1125 CAAAGAGCTGAACAAGAGCATCAATCCTGATGAGGCTGTGGCTTATGGTGC 1075 Score = 107 bits (118), Expect = 3e-18 Identities = 110/141 (78%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 195710 GCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCT 195769 || || |||||||| || || ||||||| |||||| || || ||||| ||||| || ||| Sbjct 1871 GCTGTAGTGACTGTGCCAGCCTACTTCAATGATTCTCAGCGTCAGGCAACAAAAGATGCT 1812 Query 195770 GCTGCTATTGCGGGTCTAAACTGT-CTTAGAATTATCAATGAACCAACAGCGGCTGCAAT 195828 | | ||||| || || || ||| || ||||||||||||| || ||||| ||||| || Sbjct 1811 GGAACCATTGCAGGGCTCAA-TGTACTGCGAATTATCAATGAGCCGACAGCTGCTGCGAT 1753 Query 195829 TGCTTATGGTCTGGACAAGAA 195849 || |||||||| ||||| || Sbjct 1752 AGCCTATGGTCTAGACAAAAA 1732 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/212 (70%), Gaps = 3/212 (1%) Strand=Plus/Minus Query 196599 TTCATATTCAAGTATATGAAGGAGAACGCTCCCGTG-CAAAGGATAACCATCTACTTGGA 196657 ||| |||| | || |||||||||||||| | | || | ||||| ||| | | || || Sbjct 243 TTCTTATT-AGGTGTATGAAGGAGAACG-TGCTATGACTAAGGACAACAACTTGCTGGGC 186 Query 196658 ACTTTCGATTTGACGGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGC 196717 | || || |||| || ||||| |||| ||||||||||| || |||||| | || | Sbjct 185 AAGTTTGAGCTGACTGGTATTCCCCCTGCTCCCAGAGGTGTACCTCAGATTGAAGTAACC 126 Query 196718 TTCGATATAGACGCAAATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAA 196777 || ||||| || || ||||| || || || || | |||| ||| ||| ||||||| Sbjct 125 TTTGATATTGATGCCAATGGCATCCTGAATGTGTCTGCTGTGGATAAGAGCACTGGCAAG 66 Query 196778 TCTGAAAAGATTGTGATTACCAATGACAAGGG 196809 | ||||| || || ||||||||||| Sbjct 65 GAGAACAAGATCACAATAACAAATGACAAGGG 34 >seq81479 Length=5653 Score = 113 bits (124), Expect = 6e-20 Identities = 129/173 (75%), Gaps = 3/173 (2%) Strand=Plus/Minus Query 195815 ACAGCGGCTGCAATTGCTTATGGTCTGGACAAGAACAAGGACGAAGATAAAAATGTATTG 195874 ||||| ||||| ||||| ||||| |||||||||| ||| ||| || ||| | | Sbjct 4811 ACAGCTGCTGCCATTGCCTATGGACTGGACAAGAGAGAGGG---AGAGAAGAATATCCTC 4755 Query 195875 ATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATA 195934 | ||||| | |||||||| || ||||||||||| || |||| ||||| ||| | Sbjct 4754 GTGTTTGACTTGGGTGGTGGAACCTTTGATGTCTCCCTCCTCACAATTGACAATGGAGTC 4695 Query 195935 TTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGA 195987 |||||||| ||||||| |||||| |||||||| ||||| ||||| || || Sbjct 4694 TTCGAAGTTGTGGCTACTAATGGTGACACTCATCTGGGTGGAGAAGACTTTGA 4642 Score = 102 bits (112), Expect = 1e-16 Identities = 178/259 (69%), Gaps = 0/259 (0%) Strand=Plus/Minus Query 196618 AGGAGAACGCTCCCGTGCAAAGGATAACCATCTACTTGGAACTTTCGATTTGACGGGGAT 196677 ||| ||||| ||| | |||||||| || || || |||||||| ||| | || || || Sbjct 3124 AGGTGAACGGCCCCTCACCAAGGATAATCACCTTCTGGGAACTTTTGATCTCACTGGAAT 3065 Query 196678 TCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCTTCGATATAGACGCAAATGG 196737 || |||| || | ||||| || |||||| | ||| ||| || ||||| | ||||| Sbjct 3064 CCCTCCTGCCCCTCGTGGTGTCCCCCAGATTGAAGTTACCTTTGAAATAGATGTGAATGG 3005 Query 196738 AATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAATCTGAAAAGATTGTGATTAC 196797 || || ||||||||||| ||||| | ||||||| | ||||| |||||| Sbjct 3004 CATCCTCCGTGTCACAGCTGAAGACAAAGGCACTGGCAACAAAAACAAGATCACGATTAC 2945 Query 196798 CAATGACAAGGGGCGGCTTTCTAAGGAGGAAATTGAACGTATGGTTCAAGATGCGGAAAA 196857 ||||| || ||||| | || || ||||| | |||||| | ||||| || || Sbjct 2944 AAATGATCAGAACCGGCTGACACCAGAAGAGATTGAGAGGATGGTTAATGATGCAGAGAA 2885 Query 196858 GTACAGGGAAGAAGACGAG 196876 || ||| |||||| || Sbjct 2884 GTTTGCGGAGGAAGACAAG 2866 >seq10463 Length=44968 Score = 98.7 bits (108), Expect = 1e-15 Identities = 74/87 (85%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 171963 AGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACG 172022 ||||||||| || |||||||| ||||| |||||||||||||| ||||| ||||||||||| Sbjct 351 AGGCATTCCTCCTGATCAGCAGCGACTGATTTTTGCTGGTAAGCAGCTAGAAGATGGACG 410 Query 172023 TACCCTCGCTGATTACAACGTTCAAAA 172049 || || |||| ||||| ||||||| Sbjct 411 CACGCTGTCTGACTACAATATTCAAAA 437 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 654922207352400