Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Grus_20japonensis_20[genbank_20GCA_5F002002985.1_202017-02-10] 357,545 sequences; 1,265,634,512 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq76093 176 5e-38 seq59095 131 2e-24 seq177530 120 4e-21 seq61014 120 4e-21 seq76856 98.7 1e-14 seq288894 89.7 6e-12 seq142856 87.8 2e-11 seq251178 86.0 8e-11 >seq76093 Length=1079 Score = 176 bits (194), Expect = 5e-38 Identities = 160/202 (79%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| |||||| ||| | || |||||||| ||||||||||| |||| | || Sbjct 1027 GCTTGGCCAGCTCGCCGGGCAGCAGGAGCCGCACGGCCGTCTGGATCTCCCGCGAGGTGA 968 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||||||||| || ||||||| | ||||||| |||| | Sbjct 967 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGCGAGGCCTCGCCGGCGATGCGCTCGAAGA 908 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||||| ||| | |||| ||||||||| |||||||| Sbjct 907 TGTCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGT 848 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 847 GCACCTGCTTCAGCACCTTGTA 826 >seq59095 Length=3295 Score = 131 bits (144), Expect = 2e-24 Identities = 150/202 (74%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| |||||| ||| | || || || || ||||||||||| || | || Sbjct 1107 GCTTGGCCAGCTCGCCGGGCAGCAGGAGCCGGACAGCCGTCTGGATCTCTCGTGAAGTGA 1048 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||| ||||| || ||||| ||||||| |||| | Sbjct 1047 TGGTGGAGCGCTTGTTGTAGTGAGCCAGGCGCGAAGCCTCACCAGCGATGCGCTCGAAGA 988 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 | ||||||||||| |||||||||| ||| | ||| |||||| || |||||||| Sbjct 987 TATCGTTGACAAAGGAGTTCATGATACCCATGGCCTTAGAGGAGATACCGGTGTCGGGGT 928 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 927 GCACCTGCTTCAGCACCTTGTA 906 >seq177530 Length=5944 Score = 120 bits (132), Expect = 4e-21 Identities = 149/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||||||||| || | | | ||||||||| || ||||| || || || | || Sbjct 5553 GCTTGGCCAGTTCTCCTGGGAGCAGCAGGCGCACAGCCGTCTGAATTTCCCGGGAAGTGA 5612 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| |||||||| | || ||||| ||| ||| || | ||||| || | | Sbjct 5613 TGGTGGAACGCTTGTTGTAATGGGCCAGGCGGGAGGCTTCTCCAGCAATGCGCTCAAAGA 5672 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||||| ||| | |||| ||||||||| |||||||| Sbjct 5673 TGTCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTGGAGGAGATGCCAGTGTCGGGGT 5732 Query 1254523 GCACCTGCTTGAGCACCTTGTAGA 1254546 | |||||||| ||||||||||||| Sbjct 5733 GAACCTGCTTCAGCACCTTGTAGA 5756 >seq61014 Length=11901 Score = 120 bits (132), Expect = 4e-21 Identities = 149/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||||||||| || | | | ||||||||| || ||||| || || || | || Sbjct 9930 GCTTGGCCAGTTCTCCTGGGAGCAGCAGGCGCACAGCCGTCTGAATTTCCCGGGAAGTGA 9871 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| |||||||| | || ||||| ||| ||| || | ||||| || | | Sbjct 9870 TGGTGGAACGCTTGTTGTAATGGGCCAGGCGGGAGGCTTCTCCAGCAATGCGCTCAAAGA 9811 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||||| ||| | |||| ||||||||| |||||||| Sbjct 9810 TGTCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTGGAGGAGATGCCAGTGTCGGGGT 9751 Query 1254523 GCACCTGCTTGAGCACCTTGTAGA 1254546 | |||||||| ||||||||||||| Sbjct 9750 GAACCTGCTTCAGCACCTTGTAGA 9727 >seq76856 Length=2926 Score = 98.7 bits (108), Expect = 1e-14 Identities = 90/114 (79%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 869830 CACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTACATCTCCCATACTTGCTG 869889 ||||||||| || ||||||| || ||||||||||| |||||||||| ||| | | || Sbjct 2578 CACCTCCTCCGCCGTCCAGAAGGAAGCCTCGGCCTTCTTGTACATCTGCCAGATATCGTG 2637 Query 869890 GTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTTGTCGCGCAACAGGGGTTC 869943 | | |||| ||||||| ||| |||||| |||||||| |||| |||||| || Sbjct 2638 GGACTGGATGGGGAAGATGACGAAGCGGCGAGGGTTGTCCCGCAGCAGGGGCTC 2691 >seq288894 Length=457 Score = 89.7 bits (98), Expect = 6e-12 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 507105 AGCGGTTCAAGGGCAAGGAGGGTAGGATCCGCGGCAATTGCATGGGCAAGCGCGTCAACT 507164 ||||| | |||||||||||||| || | || ||||| ||||||||||| || | | Sbjct 214 AGCGGCTGAAGGGCAAGGAGGGCCGGGTGCGGGGCAACCTGATGGGCAAGCGGGTGGATT 155 Query 507165 TTACCGCGCGCGCCGTCATCAGCCCCGACCCCGAGATCGACATTGACGAGGTGGGCGTGC 507224 | | || ||| ||||||||| |||||||||| | | | ||| ||| |||||||||| | Sbjct 154 TCTCGGCCCGCACCGTCATCACCCCCGACCCCAACCTGGCCATCGACCAGGTGGGCGTCC 95 Query 507225 CC 507226 || Sbjct 94 CC 93 >seq142856 Length=3306 Score = 87.8 bits (96), Expect = 2e-11 Identities = 132/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| |||||| ||| | || | | |||| ||||| | |||||| | || Sbjct 45 GCTTGGCCAGCTCGCCGGGCAGCAGGAGCCTCGCGGCCGTCTGCACCTCGCGGCTAGTGA 104 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||| | ||| | || ||||| || |||||| | | | | || |||| | Sbjct 105 TGGTGGAGCGGTGGTTGTACTGGGCCAGGCGCGAGGCCTCCGAGGCCAGCCGCTCGAAGA 164 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || || ||||||| ||| | ||| ||||||||| ||| |||| Sbjct 165 TGTCGTTGACGAAGGAATTCATGATGCTCATGGCCTTAGAGGAGATGCCGGTGTCTGGGT 224 Query 1254523 GCACCTGC 1254530 |||||||| Sbjct 225 GCACCTGC 232 >seq251178 Length=426 Score = 86.0 bits (94), Expect = 8e-11 Identities = 86/112 (77%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 512050 CGTCATCTCCTTTGACGGCACCTACGTCAACGACCGCCACTTTGCGCTGGCCACCGACAC 512109 |||||||||||| ||||| ||||||||||| |||| ||| | || ||| | ||||| Sbjct 179 CGTCATCTCCTTCGACGGTTCCTACGTCAACTACCGTCACCTGGCCCTGCTCTGTGACAC 120 Query 512110 CATGTGCTGCCGCGGATCGGTGGTGGCCGTCACGCGCCACGGCTTCAACCGC 512161 |||| || |||||| | ||||| |||| ||||||||| |||||||| Sbjct 119 CATGACCTCCCGCGGGCACCTCATGGCCATCACCCGCCACGGCGTCAACCGC 68 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6077797382916765