Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Grus_20japonensis_20[genbank_20GCA_5F002002985.1_202017-02-10] 357,545 sequences; 1,265,634,512 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq76093 228 1e-53 seq59095 188 1e-41 seq177530 170 3e-36 seq61014 170 3e-36 seq142856 147 3e-29 seq288894 95.1 2e-13 seq76856 87.8 3e-11 >seq76093 Length=1079 Score = 228 bits (252), Expect = 1e-53 Identities = 204/256 (80%), Gaps = 0/256 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| |||||||||||| ||||||| |||||| ||| Sbjct 1066 TGTACTTGGTGACAGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCCAGCTCGCCGGGCA 1007 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || |||||||| ||||||||||| || | | ||| ||| ||||||||| | Sbjct 1006 GCAGGAGCCGCACGGCCGTCTGGATCTCCCGCGAGGTGATGGTGGAGCGCTTGTTGTAGT 947 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||||||| ||||||| | ||||||| |||| ||||||||||| || ||||||| Sbjct 946 GCGCCAGGCGCGAGGCCTCGCCGGCGATGCGCTCGAAGATGTCGTTGACGAAGGAGTTCA 887 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| |||||||||||||||||| |||||||||| Sbjct 886 TGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGT 827 Query 1485710 AAACAAAGGACGAGTA 1485725 | || || |||||| Sbjct 826 ACACGTAGATCGAGTA 811 >seq59095 Length=3295 Score = 188 bits (208), Expect = 1e-41 Identities = 188/244 (77%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||||||||| ||||| |||||| ||||||| |||||| ||| Sbjct 1146 TGTACTTGGTGACGGCCTTGGTACCCTCGGAGACAGCGTGCTTGGCCAGCTCGCCGGGCA 1087 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || || || || ||||||||||| || | ||| ||| ||||||||| | Sbjct 1086 GCAGGAGCCGGACAGCCGTCTGGATCTCTCGTGAAGTGATGGTGGAGCGCTTGTTGTAGT 1027 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | |||||||| ||||| ||||||| |||| || ||||||||||| ||||||| Sbjct 1026 GAGCCAGGCGCGAAGCCTCACCAGCGATGCGCTCGAAGATATCGTTGACAAAGGAGTTCA 967 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | || |||||| || |||||||||||||||||| |||||||||| Sbjct 966 TGATACCCATGGCCTTAGAGGAGATACCGGTGTCGGGGTGCACCTGCTTCAGCACCTTGT 907 Query 1485710 AAAC 1485713 | || Sbjct 906 ACAC 903 >seq177530 Length=5944 Score = 170 bits (188), Expect = 3e-36 Identities = 184/244 (75%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||| ||||| ||||| ||||| |||||| |||||||||| || | | Sbjct 5514 TGTACTTGGTGACGGCTTTGGTGCCCTCCGAGACAGCGTGCTTGGCCAGTTCTCCTGGGA 5573 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||||||||| || ||||| || || |||| ||| ||| |||||||| Sbjct 5574 GCAGCAGGCGCACAGCCGTCTGAATTTCCCGGGAAGTGATGGTGGAACGCTTGTTGTAAT 5633 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | ||||||||| ||| || | ||||| || | ||||||||||| || ||||||| Sbjct 5634 GGGCCAGGCGGGAGGCTTCTCCAGCAATGCGCTCAAAGATGTCGTTGACGAAGGAGTTCA 5693 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| ||||||||| |||||||| |||||||||| Sbjct 5694 TGATGCCCATGGCCTTGGAGGAGATGCCAGTGTCGGGGTGAACCTGCTTCAGCACCTTGT 5753 Query 1485710 AAAC 1485713 | || Sbjct 5754 AGAC 5757 >seq61014 Length=11901 Score = 170 bits (188), Expect = 3e-36 Identities = 184/244 (75%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||| ||||| ||||| ||||| |||||| |||||||||| || | | Sbjct 9969 TGTACTTGGTGACGGCTTTGGTGCCCTCCGAGACAGCGTGCTTGGCCAGTTCTCCTGGGA 9910 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||||||||| || ||||| || || |||| ||| ||| |||||||| Sbjct 9909 GCAGCAGGCGCACAGCCGTCTGAATTTCCCGGGAAGTGATGGTGGAACGCTTGTTGTAAT 9850 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | ||||||||| ||| || | ||||| || | ||||||||||| || ||||||| Sbjct 9849 GGGCCAGGCGGGAGGCTTCTCCAGCAATGCGCTCAAAGATGTCGTTGACGAAGGAGTTCA 9790 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| ||||||||| |||||||| |||||||||| Sbjct 9789 TGATGCCCATGGCCTTGGAGGAGATGCCAGTGTCGGGGTGAACCTGCTTCAGCACCTTGT 9730 Query 1485710 AAAC 1485713 | || Sbjct 9729 AGAC 9726 >seq142856 Length=3306 Score = 147 bits (162), Expect = 3e-29 Identities = 171/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| || ||||||||| ||||||| |||||| ||| Sbjct 6 TGTACTTGGTGACGGCCTTGGTGCCCTCGGACACGGCGTGCTTGGCCAGCTCGCCGGGCA 65 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || | | |||| ||||| | ||||||| | ||| ||| ||| | ||| || | Sbjct 66 GCAGGAGCCTCGCGGCCGTCTGCACCTCGCGGCTAGTGATGGTGGAGCGGTGGTT-GTAC 124 Query 1485590 -GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648 | |||||||| |||||| | | | | || |||| ||||||||||| || || ||| Sbjct 125 TGGGCCAGGCGCGAGGCCTCCGAGGCCAGCCGCTCGAAGATGTCGTTGACGAAGGAATTC 184 Query 1485649 ATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGC 1485696 ||||| ||| | || ||||||||| ||| |||||||||||| Sbjct 185 ATGATGCTCATGGCCTTAGAGGAGATGCCGGTGTCTGGGTGCACCTGC 232 >seq288894 Length=457 Score = 95.1 bits (104), Expect = 2e-13 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 429061 AGCGATTCAAGGGCAAGGAGGGCCGGATCCGCGGCAATTGCATGGGCAAGCGCGTCAACT 429120 |||| | |||||||||||||||||| | || ||||| ||||||||||| || | | Sbjct 214 AGCGGCTGAAGGGCAAGGAGGGCCGGGTGCGGGGCAACCTGATGGGCAAGCGGGTGGATT 155 Query 429121 TTACGGCGCGCGCCGTCATCAGTCCCGACCCCGAAATCGACATTGACGAGGTGGGCGTGC 429180 | |||| ||| ||||||||| ||||||||| | | | ||| ||| |||||||||| | Sbjct 154 TCTCGGCCCGCACCGTCATCACCCCCGACCCCAACCTGGCCATCGACCAGGTGGGCGTCC 95 Query 429181 CC 429182 || Sbjct 94 CC 93 >seq76856 Length=2926 Score = 87.8 bits (96), Expect = 3e-11 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 796303 ACCTCCTCGGCGGTCCAAAAGGAGGCCTCGGCCTTTTTGTACATCTCCCATATCCGTTGG 796362 |||||||| || ||||| ||||| ||||||||||| |||||||||| ||| || ||| Sbjct 2579 ACCTCCTCCGCCGTCCAGAAGGAAGCCTCGGCCTTCTTGTACATCTGCCAGATATCGTGG 2638 Query 796363 TAGCGGATGGGGAACAGAACAAAGCGATTGGGGTTCTCGCGTAGCAGCGGCTC 796415 | |||||||||| | || ||||| ||||| || || ||||| ||||| Sbjct 2639 GACTGGATGGGGAAGATGACGAAGCGGCGAGGGTTGTCCCGCAGCAGGGGCTC 2691 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7878212707587255