Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Grus_20japonensis_20[genbank_20GCA_5F002002985.1_202017-02-10] 357,545 sequences; 1,265,634,512 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq151086 113 3e-19 seq133340 87.8 1e-11 >seq151086 Length=2859 Score = 113 bits (124), Expect = 3e-19 Identities = 896/1434 (62%), Gaps = 32/1434 (2%) Strand=Plus/Minus Query 281432 ACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTC 281491 ||||| || |||||||||||||| | ||||| ||||| || || || ||||| || | Sbjct 2083 ACATTCAGGATACCATTGGCATCGATGTCAAAAGTGACCTCGATCTGGGGGACTCCACGG 2024 Query 281492 TGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAAT 281551 | || || ||||| ||| | | ||| | ||||| || || || || || | Sbjct 2023 GGTGCCGGGGGGATGCCTGTTAGGTCAAACTTGCCCAGCAAGTTGTTGTCCTTCGTCATA 1964 Query 281552 TTTCGTTCACCCTCGAAAATTTGGAT-AGTA-ACTACAGTTTGATTATCTGAATAAGTTG 281609 | ||||||||| | | |||| || | ||| | | || || || || ||||| | Sbjct 1963 GCCCTCTCACCCTCGTACACCTGGACCAGGACACTGC--TCTGGTTGTCAGAGTAAGTGG 1906 Query 281610 TAAATACTCTGGATTT-TTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATA 281668 | || |||| ||| ||| ||||| || ||||| | | || | | |||||| Sbjct 1905 TGAAGG-TCTGAGTTTGTTTGGTGGGAATGGTGGTGTTACGCTTGATGAGAGCGGTCATC 1847 Query 281669 ATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTT 281728 | ||||||||||| || | || || || ||||| |||||||| | || | | || Sbjct 1846 ACTCCACCAGCTGTCTCGATGCCCAGGGACAGAGGGGTGACATCCAACAGCAGCAGATCC 1787 Query 281729 TGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCA 281788 || | || ||| | | || | || ||||||||||| | |||||| ||||| ||| Sbjct 1786 TGCACATTCTCAGACTTGTCTCCCATGAGGATAGCTGCTTGCACAGCAGCGCCATAAGCA 1727 Query 281789 ACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGA 281848 ||||| |||||||| || | | | || || | ||| |||||||| || | || Sbjct 1726 ACAGCCTCATCAGGGTTGATGCTCTTGTTGAGCTCTTTGCCATTGAAGAAGTCCTGTAGC 1667 Query 281849 AGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGT 281908 || | | | ||| || ||||| | || || || || | || || || || | |||| Sbjct 1666 AGCTTTTGGATCTTGGGGATACGGGTAGAGCCACCCACCAGCACGATCTCCTGAATCTGT 1607 Query 281909 GATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTCTAAAC 281968 || || || || | ||| | | || || || || || || | | || Sbjct 1606 CCCTTGTCTAGCTTGGCATCACGCAGGGCCTTCTCCACTGGCTCCAGGGTGCCACGGAAG 1547 Query 281969 AAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAA---GAGTGACATTATAA-TCAAT 282024 | || | | || || ||||| || | ||||| |||| || || ||||| Sbjct 1546 AGATCAGCATTGAGCTCCTCGAAGCGGGCACGAGTAATGGAAGTG----TAGAAGTCAAT 1491 Query 282025 TCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGA--AGATAGTGCACGT 282082 || || || | || |||| ||||| ||| ||| || ||||| || |||| || Sbjct 1490 ACCCTCAAAAAGGGAGTCAATCTCAATGCTAGCTTGTGTGGAAGAGCTGAGAGTG--CGC 1433 Query 282083 TTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATT--GATTCAAAT 282140 || || | ||||| ||||| | |||| | | || | ||| || | | | Sbjct 1432 TTTGCCCTCTCACAAGCTGTACGCAGTCGCCTCACTGC--TCGCTTGTTACCAGCAATGT 1375 Query 282141 CTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAAT 282200 | || | || | |||||| ||||| ||| | | || | || || ||||| | Sbjct 1374 CACGCTTGTGCTTACGCTTGAATTCTTCCACAAAGTGGTTCACCATGCGGTTGTCAAAGT 1315 Query 282201 CTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAA 282260 | || || |||| | || | || | || | | || | || | ||||| |||| Sbjct 1314 CCTCCCCACCCAGATGGGTGTCACCAGCTGTGGACTTCACCTCAAAGATGCCATCCTCAA 1255 Query 282261 GAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTT 282320 | | | | ||||| || || || |||| ||||| || || |||||| | | Sbjct 1254 TGGTAAGGATGGACACATCGAAAGTGCCCCCTCCCAAGTCAAAGATCAGCACATTCTTCT 1195 Query 282321 CTTTGTCTTGG------TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCAT 282374 || | || || || || | ||||| || | |||||| || || || || | Sbjct 1194 CTCCAGCCCGGGTACCTTTCTTGTCCAAGCCATAGGCTATAGCAGCTGCTGTGGGCTCGT 1135 Query 282375 TAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTT 282434 | ||||| | || |||||||| |||| || | || |||||||| ||||| || | | Sbjct 1134 TGATAATACGCATCACATTAAGGCCAGTGATGGTGCCAGCATCTTTGGTGGCCTGGCGCT 1075 Query 282435 GTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCA-TCTGTTACTTCTTTTCCAATA 282493 | || || || || || ||||| || || || || ||| |||| || | || | | Sbjct 1074 GAGAGTCATTGAAGTAAGCAGGCACGGTGATGACAGCATTCTG-CACCTTGCGCCCCAGA 1016 Query 282494 TAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGAA 282553 || || || | | ||||| || | | | ||| || || | ||||| ||| Sbjct 1015 TAGGCCTCAGCAATCTCCTTCATCTTGGTAAGGACCATGGAGCTGATCTCCTCTGG-GAA 957 Query 282554 TATTGCTTGGAT-TCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAAT 282612 | | || || ||| | || |||| | | || || ||| |||| | Sbjct 956 GAAGGTTTTCATCTCACCCTTGTACTCCACTTGCACCTTGGGCTTGCCACCCTCATTCAC 897 Query 282613 AACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACC 282672 || || ||||| | ||||| || || || || | |||||| | | | | || Sbjct 896 CACACGGAAGGGCCAGTGCTTCATGTCAGACTGCACTGTAGGGTCATCATACTTGCGGCC 837 Query 282673 AATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGC 282732 ||| | || || |||||||| || || ||||| || || | || | || | ||||| Sbjct 836 AATGAGACGCTTGGCATCAAAGATGGTGTTGGTAGGGTTCATAGCCACCTGGTTCTTGGC 777 Query 282733 TGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATT 282792 ||||| ||||| ||| | ||||| || || || | ||||| || || ||||| || Sbjct 776 AGCATCACCAATGAGACGCTCTGTATCGGTGAAGGCCACATAGCTGGGCGTGGTGCGGTT 717 Query 282793 ACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACA 282846 || || ||||| || || || || ||||| |||| || | ||||| || || Sbjct 716 GCCCTGGTCATTGGCGATGATCTCCACTTTGCCATGCTGGAAGACACCCACGCA 663 >seq133340 Length=5613 Score = 87.8 bits (96), Expect = 1e-11 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 131176 TGTAGTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTAT 131235 ||| || || || | || || || ||||| || |||||| | ||| | | | ||||| Sbjct 156 TGTTGTGGCTACGGTGGCTTTCGGAATGGGCATCAATAAAGCAGATATCCGGATGGTTAT 215 Query 131236 TCATTACGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCG 131295 ||||||||| || || ||| | || ||| ||||||||||||||||| ||||| ||||| Sbjct 216 TCATTACGGTGCCCCTAAGGAAATGGAATCCTATTATCAAGAAATTGGGAGAGCTGGTCG 275 Query 131296 TGATGG 131301 ||||| Sbjct 276 CGATGG 281 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3723076451485170