Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Grus_20japonensis_20[genbank_20GCA_5F002002985.1_202017-02-10] 357,545 sequences; 1,265,634,512 total letters Query= NC_024450.1 Length=204054 Score E Sequences producing significant alignments: (Bits) Value seq217177 105 9e-18 seq350104 102 1e-16 seq324057 96.9 5e-15 >seq217177 Length=4104 Score = 105 bits (116), Expect = 9e-18 Identities = 67/73 (92%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 8657 TTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 8716 |||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||| Sbjct 1422 TTCCTCGTTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATT 1363 Query 8717 CCCCGACGAGGAG 8729 |||||||| |||| Sbjct 1362 CCCCGACGGGGAG 1350 Score = 102 bits (112), Expect = 1e-16 Identities = 67/73 (92%), Gaps = 1/73 (1%) Strand=Plus/Minus Query 11730 TCCTCGTTAGTATAGTGGTA-GTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 |||||||||||||||||||| |||| |||| ||||| | ||||||||||||||||||||| Sbjct 1421 TCCTCGTTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 1362 Query 11789 CCCGACGAGGAGG 11801 ||||||| ||||| Sbjct 1361 CCCGACGGGGAGG 1349 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 1350 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 1409 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 1410 TACTAACGAGGA 1421 >seq350104 Length=828 Score = 102 bits (112), Expect = 1e-16 Identities = 67/73 (92%), Gaps = 1/73 (1%) Strand=Plus/Minus Query 11731 CCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTCC 11789 |||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||||| Sbjct 828 CCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCC 769 Query 11790 CCGACGAGGAGGG 11802 |||||| |||||| Sbjct 768 CCGACGGGGAGGG 756 Score = 102 bits (112), Expect = 1e-16 Identities = 65/71 (92%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 8659 CCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTCC 8718 |||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||||| Sbjct 828 CCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCC 769 Query 8719 CCGACGAGGAG 8729 |||||| |||| Sbjct 768 CCGACGGGGAG 758 Score = 93.3 bits (102), Expect = 5e-14 Identities = 63/71 (89%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 758 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 817 Query 139413 TACTAACGAGG 139423 ||||||||||| Sbjct 818 TACTAACGAGG 828 >seq324057 Length=1006 Score = 96.9 bits (106), Expect = 5e-15 Identities = 66/73 (90%), Gaps = 1/73 (1%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCC-GTCTGTCGCACGGGAGACCGGGGTTCGATT 8716 ||||||||||||||||||| ||||| ||| | ||||| | |||||||||||||||||||| Sbjct 19 TCCTCGTTAGTATAGTGGTGAGTATCCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATT 78 Query 8717 CCCCGACGAGGAG 8729 |||||||| |||| Sbjct 79 CCCCGACGGGGAG 91 Score = 93.3 bits (102), Expect = 5e-14 Identities = 66/73 (90%), Gaps = 2/73 (3%) Strand=Plus/Plus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCC-GTCTGTCGCACGGGAGACCGGGGTTCGATT 11787 ||||||||||||||||||| ||||| ||| | ||||| | |||||||||||||||||||| Sbjct 19 TCCTCGTTAGTATAGTGGTGAGTATCCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATT 78 Query 11788 CCCCGACGAGGAG 11800 |||||||| |||| Sbjct 79 CCCCGACGGGGAG 91 Score = 89.7 bits (98), Expect = 7e-13 Identities = 66/76 (87%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAAC-GGGGATATTAACCACT 139411 |||| ||||||||| |||||||||||||||||| | |||| | ||||||| | |||||| Sbjct 91 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGGATACTCACCACT 32 Query 139412 ATACTAACGAGGATTT 139427 ||||||||||||| || Sbjct 31 ATACTAACGAGGAGTT 16 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 649927032574800