Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Grus_20japonensis_20[genbank_20GCA_5F002002985.1_202017-02-10] 357,545 sequences; 1,265,634,512 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq10749 116 4e-21 seq15833 91.5 1e-13 >seq10749 Length=40418 Score = 116 bits (128), Expect = 4e-21 Identities = 151/206 (73%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | |||||| || ||||| || ||||| || || ||| | | | || || |||| Sbjct 40077 ATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCA-TCTTCCAGCT 40135 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 |||| || || | || |||| |||||| || || || |||||||||||||| ||||| Sbjct 40136 GCTTCCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGATCT 40195 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | || | | ||||| ||||| ||||||| || |||| ||||| ||| ||||| | Sbjct 40196 TGGCTTTCACGTTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCTTGCCTG 40255 Query 133636 TCAGAGTTTTTACGAAAATCTGCATG 133661 |||| || || || || ||||||||| Sbjct 40256 TCAGGGTCTTCACAAAGATCTGCATG 40281 >seq15833 Length=18383 Score = 91.5 bits (100), Expect = 1e-13 Identities = 79/98 (81%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 148866 TACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTG 148925 ||||| || || || | || ||||||||||||||||| |||| ||||| |||||| Sbjct 8317 TACTCCACTATTTCTGTACATAGATTGCTGCATTTGATGGTCCCCAAGTTCTGCTGATTG 8376 Query 148926 CTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGG 148963 ||||| | |||||| | ||| ||||||||||||||||| Sbjct 8377 CTCTTCCGGTTGCAAGAGTCTTTGTACAGCATGTACGG 8414 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 481260241375800