Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Grus_20japonensis_20[genbank_20GCA_5F002002985.1_202017-02-10] 357,545 sequences; 1,265,634,512 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq180288 161 1e-34 seq251720 102 9e-17 >seq180288 Length=5239 Score = 161 bits (178), Expect = 1e-34 Identities = 574/886 (65%), Gaps = 26/886 (3%) Strand=Plus/Plus Query 162121 TCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCGAT 162180 |||||||| || || || | ||| || ||| | | ||||| || || || ||| Sbjct 445 TCGAACTTATTAGCAAAAAAGTGGTGGT--TTCGT-AGCATCCAGTTCAGGTCTCCCACC 501 Query 162181 CCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCATCG 162240 || || || || || || || | ||| || || ||||| || || || | || || | | Sbjct 502 CCAAAAACACAGACAGAGCGAATGTGAACTCCACTGCATGGTGGGTAGGGTGCACCTTTG 561 Query 162241 TCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGGAG 162300 |||||| || || |||| |||||||| || ||||| | | || | ||||||||| Sbjct 562 GACACATCACCTTCAAAGTACTGCCACTTGACAAACCTTGCCAGTGCATTCATGTCGGAA 621 Query 162301 GTGTCGTACTTGTACACT-GACGGCACGGCTCCAGGAACACCCGGCAGTCTCTGTAGAGT 162359 |||||||||| |||| || | || || || || || | || | |||||| | || Sbjct 622 ACATCGTACTTGT-CACTAGAAGAAACTGCACCTGGGACTTCAGGGATTCTCTGAATTGT 680 Query 162360 AGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTGAC 162419 |||||||| | || ||||| || || || || || | |||||| ||||||| | | Sbjct 681 TGCCCACAGATACTCATCTGGGCTGTAAGTGTCTTTTGCCCACTCAATGAACT---TAAG 737 Query 162420 CGTTTTATCG---TATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCT 162476 |||| | | || | ||| || | ||| | || | ||| || || || Sbjct 738 TATTTTGCTGCTTTCTAACACGTATTCTACAAATCTTCTGCTAACTACAAAATAGGCACT 797 Query 162477 ACCAGAAAACACGGGTA-TGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTA 162535 ||||||||| | | | | | | ||| || ||| ||||||| |||||| || || Sbjct 798 ACCAGAAAAAAATTGGAGTACTGAGAGGTGGTAGCTGTTTGTCTACACCCGTATTCTTTA 857 Query 162536 CCATTCCCTCTACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTAGACGGG- 162594 | || || | | | | || || ||||||| | ||| || || || Sbjct 858 TTTTACCATCAATAATCTCATGGTGTTTTTTCCACCTTACTTCTTTA----TAAACAGGC 913 Query 162595 ---TGTTCGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCT 162651 | ||| || || | ||||| ||| | || || | | || || || Sbjct 914 ATTTTTTCTGTTTCCAAGCTGTTTTCACCTTTAAGAGCTTTTAATTTCTCTACTATTTCC 973 Query 162652 AGATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACG 162711 | |||||||| | |||||||| |||||||||| || || | |||||||| || Sbjct 974 TGGTTGGTCTTTATAGGAAAGTCCATGCCGCAGAGGTTTATTAGGTATTTCCAGTTTGAA 1033 Query 162712 CTGAGTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCG 162771 || || ||| ||||| | | ||||| | || ||||| || | ||||| || || Sbjct 1034 CTTCTTCTGTAGAGATCTTTCATGCAGTTAATGTCTGCCTGCACCCTGCTCCATGAAGCA 1093 Query 162772 TACACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCC 162831 ||||| || ||||| ||| ||| | ||||||||| || ||||| || ||||| ||| Sbjct 1094 TACACAACACTCTCTAACTGGCTGGAAATAAAGACATTATCAAAACATGAGACTATTCCC 1153 Query 162832 ATCACGGCCAGTGAGAACA---TCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGA 162888 |||| || || | || | || || | ||| | || || || | |||||| | | Sbjct 1154 TTCACAGC-AGCAAAAAAAGATTCTGGA--GACTTCTTGTCAACATGAATGCAGTAAAAA 1210 Query 162889 TTCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACC 162948 ||||||||||| ||||| | || || | ||| || | ||||||||| || || | ||| Sbjct 1211 TTCTGAGGGGCATAGATTGATCTTAGAAGTCTATCAAGCATCTCTATTTTGTGATAAACC 1270 Query 162949 ACGATAGAATACGCTATGGGGAACTCAGCCTCCTCGCGACTGAGAG 162994 || || || || || || || || || || || || ||||||| Sbjct 1271 ACTATTGAGTAAGCAATCGGAAATTCTGCTTCTTCATTGCTGAGAG 1316 >seq251720 Length=1010 Score = 102 bits (112), Expect = 9e-17 Identities = 259/387 (67%), Gaps = 9/387 (2%) Strand=Plus/Plus Query 162610 CTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGATTGGTCTTAAGGGGA 162669 ||||| || ||| || ||||||| ||| || ||||| |||||| || | ||| Sbjct 235 CTGTTCCGCCCCTGCAGCACCTTCAGGACACGGACGATCTCGGCATTGGTTTTGATGGGG 294 Query 162670 AAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTGAG-TCCGTA-CAGAT 162727 || || ||||||||| || | || || ||| | | | | | || | | ||| | Sbjct 295 AAATCTGTGCCGCAGGTGTTGAGGACGTAGCGCCA--TGGCACAGGGCTCTGCAACAGGT 352 Query 162728 CCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACACGACGCTCTCCA 162787 |||| | ||||| || |||||||| | || ||| || || || || || | |||| Sbjct 353 CCTGCATGCAGTTGAGGTCGGCCTGCAGCCGGGACCAGGAGGCATAGACCACCTTTTCCA 412 Query 162788 ACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATCACGGCCAGTGAGA 162847 | | || |||||||||||| ||| || | || || || ||||||| || Sbjct 413 GGCGGCTAGCCACAAAGACATTGGGGAAGCAAGCTACGATGGCCCGCACGGCCTCCTGGA 472 Query 162848 A--CATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCTGAGGGGCGTAGAT 162905 | | | || | || || || | ||| |||||||| | |||||||||||||| | Sbjct 473 AGGCGGCCGGG--GACTTGCTGTCAATGTGGACGCAGTAGATGTTCTGAGGGGCGTACAG 530 Query 162906 GGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGATAGAATACGCTAT 162965 || || ||| | | |||||||||||| || || | ||| | || || || || || || Sbjct 531 GGACCGCAGGAGCCGCTCGAACATCTCGAT-TTGTTGTGGATGACCATGGAGTAGGCGAT 589 Query 162966 GGGGAACTCAGCCTCCTCGCGACTGAG 162992 |||||||| |||||||| |||| || Sbjct 590 AGGGAACTCTGCCTCCTCCTGACTCAG 616 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 575846806632000