Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Grus_20japonensis_20[genbank_20GCA_5F002002985.1_202017-02-10] 357,545 sequences; 1,265,634,512 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq76093 197 2e-44 seq59095 152 7e-31 seq177530 134 2e-25 seq61014 134 2e-25 seq142856 109 8e-18 seq288894 95.1 2e-13 seq76856 89.7 7e-12 >seq76093 Length=1079 Score = 197 bits (218), Expect = 2e-44 Identities = 182/229 (79%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||||||| || || |||| || |||| ||||| Sbjct 826 TACAAGGTGCTGAAGCAGGTGCACCCCGACAC-----GGGCATC-TCGTCCAAGGCCATG 879 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || ||||||||||| |||| ||||||| | ||||||| ||| Sbjct 880 GGCATCATGAACTCCTTCGTCAACGACATCTTCGAGCGCATCGCCGGCGAGGCCTCGCGC 939 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||||||| ||| ||| | |||| ||||||||||| |||||||| Sbjct 940 CTGGCGCACTACAACAAGCGCTCCACCATCACCTCGCGGGAGATCCAGACGGCCGTGCGG 999 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || | ||| |||||| ||||||| ||||||||||||||||||||||| Sbjct 1000 CTCCTGCTGCCCGGCGAGCTGGCCAAGCACGCCGTCTCCGAGGGCACCA 1048 >seq59095 Length=3295 Score = 152 bits (168), Expect = 7e-31 Identities = 172/229 (75%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||||||| |||| | ||| ||| ||| ||||| Sbjct 906 TACAAGGTGCTGAAGCAGGTGCACCCCGACACCGGT-----ATC-TCCTCTAAGGCCATG 959 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| ||||||||||| || |||| ||||||| ||||| ||| Sbjct 960 GGTATCATGAACTCCTTTGTCAACGATATCTTCGAGCGCATCGCTGGTGAGGCTTCGCGC 1019 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||| | || |||||||||| ||| ||| | || ||||||||||| || || || Sbjct 1020 CTGGCTCACTACAACAAGCGCTCCACCATCACTTCACGAGAGATCCAGACGGCTGTCCGG 1079 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || | ||| |||||| ||||||| |||||| ||||||||||| |||| Sbjct 1080 CTCCTGCTGCCCGGCGAGCTGGCCAAGCACGCTGTCTCCGAGGGTACCA 1128 >seq177530 Length=5944 Score = 134 bits (148), Expect = 2e-25 Identities = 170/231 (74%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 724912 TCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCA 724971 ||||||||||||| |||||||| |||||| || ||| |||| ||| |||| ||| Sbjct 5756 TCTACAAGGTGCTGAAGCAGGTTCACCCCGACAC---TGG--CATC-TCCTCCAAGGCCA 5703 Query 724972 TGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTC 725031 || ||||||||||| || ||||||||||| | || ||||| | || ||| | Sbjct 5702 TGGGCATCATGAACTCCTTCGTCAACGACATCTTTGAGCGCATTGCTGGAGAAGCCTCCC 5643 Query 725032 GCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGC 725091 ||||||| | | ||||||||| ||| ||| | || || || ||||| || |||| Sbjct 5642 GCCTGGCCCATTACAACAAGCGTTCCACCATCACTTCCCGGGAAATTCAGACGGCTGTGC 5583 Query 725092 GCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||||| | | | || |||||||||| |||||| ||||| |||||||||| Sbjct 5582 GCCTGCTGCTCCCAGGAGAACTGGCCAAGCACGCTGTCTCGGAGGGCACCA 5532 >seq61014 Length=11901 Score = 134 bits (148), Expect = 2e-25 Identities = 170/231 (74%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 724912 TCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCA 724971 ||||||||||||| |||||||| |||||| || ||| |||| ||| |||| ||| Sbjct 9727 TCTACAAGGTGCTGAAGCAGGTTCACCCCGACAC---TGG--CATC-TCCTCCAAGGCCA 9780 Query 724972 TGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTC 725031 || ||||||||||| || ||||||||||| | || ||||| | || ||| | Sbjct 9781 TGGGCATCATGAACTCCTTCGTCAACGACATCTTTGAGCGCATTGCTGGAGAAGCCTCCC 9840 Query 725032 GCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGC 725091 ||||||| | | ||||||||| ||| ||| | || || || ||||| || |||| Sbjct 9841 GCCTGGCCCATTACAACAAGCGTTCCACCATCACTTCCCGGGAAATTCAGACGGCTGTGC 9900 Query 725092 GCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||||| | | | || |||||||||| |||||| ||||| |||||||||| Sbjct 9901 GCCTGCTGCTCCCAGGAGAACTGGCCAAGCACGCTGTCTCGGAGGGCACCA 9951 >seq142856 Length=3306 Score = 109 bits (120), Expect = 8e-18 Identities = 131/178 (74%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 724965 AAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAG 725024 ||| ||||| |||||||| || || ||||||||||| |||| || | | | | ||| Sbjct 201 AAGGCCATGAGCATCATGAATTCCTTCGTCAACGACATCTTCGAGCGGCTGGCCTCGGAG 142 Query 725025 GCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACC 725084 ||| |||||||| | | |||| | ||| ||| ||| | |||||| | ||||| Sbjct 141 GCCTCGCGCCTGGCCCAGTACAACCACCGCTCCACCATCACTAGCCGCGAGGTGCAGACG 82 Query 725085 GCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 |||| | | || | ||| |||||| ||||||| ||||||||| ||||||||||||| Sbjct 81 GCCGCGAGGCTCCTGCTGCCCGGCGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 24 >seq288894 Length=457 Score = 95.1 bits (104), Expect = 2e-13 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 1818122 GGGCACGCCCACCTCGTCAATGTCAATCTCGGGGTCGGGGCTGATGACGGCGCGCGCGGT 1818181 ||| |||||||||| ||| ||| | | | |||||||||| ||||||||| ||| || | Sbjct 93 GGGGACGCCCACCTGGTCGATGGCCAGGTTGGGGTCGGGGGTGATGACGGTGCGGGCCGA 152 Query 1818182 AAAGTTGACGCGCTTGCCCATGCAATTGCCGCGGATCCTGCCCTCCTTGCCCTTGAACCG 1818241 || | || ||||||||||| ||||| || | || ||||||||||||||| | ||| Sbjct 153 GAAATCCACCCGCTTGCCCATCAGGTTGCCCCGCACCCGGCCCTCCTTGCCCTTCAGCCG 212 Query 1818242 CT 1818243 || Sbjct 213 CT 214 >seq76856 Length=2926 Score = 89.7 bits (98), Expect = 7e-12 Identities = 89/114 (78%), Gaps = 1/114 (1%) Strand=Plus/Minus Query 1455716 GAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGG 1455775 ||||| |||||||| || ||||| |||||| ||| | |||||||||| | ||| Sbjct 2691 GAGCCCCTGCTGCGGGACAACCCTCGCCGCTTCGTCATCTTCCCCATCCAGTCCCACGAT 2632 Query 1455776 ATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGT 1455829 || ||| | |||||| || ||||||||||| ||||| ||||| || |||||||| Sbjct 2631 ATCTGGCAGATGTAC-AAGAAGGCCGAGGCTTCCTTCTGGACGGCGGAGGAGGT 2579 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7143325327582290