Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Grus_20japonensis_20[genbank_20GCA_5F002002985.1_202017-02-10] 357,545 sequences; 1,265,634,512 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq41976 107 2e-18 seq76856 105 5e-18 seq833 82.4 6e-11 >seq41976 Length=14171 Score = 107 bits (118), Expect = 2e-18 Identities = 118/157 (75%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 41047 TGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGT 41106 ||||||| |||||||| || ||| | || ||||| || ||| ||||||||| ||| Sbjct 8565 TGATGGCTTTGCCACCATGCCATGCCCTTTGCCAGTTCTATGTTCTAAATGGTGAATTGT 8506 Query 41107 CATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGA 41166 | || ||| | ||||| || || || || ||||||||||| || || || || || || | Sbjct 8505 CTTGCCAACTCTATCAGAGGTCTGGAGATATGGGACTAGGAGTGCCTTTCAATATTGCCA 8446 Query 41167 GTTATGCTCTGCTCACGTATATGATTGCACACGTTAC 41203 | ||| | |||||||| || |||||||| || || || Sbjct 8445 GCTATTCACTGCTCACATACATGATTGCCCATGTCAC 8409 >seq76856 Length=2926 Score = 105 bits (116), Expect = 5e-18 Identities = 88/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 43913 CAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAAT 43972 |||||||| || | ||||||| || ||||| ||||| || || |||||||| ||||| Sbjct 1768 CAAGAAGTACAGATCACAGAAGCTCGTTGTTTCTATGGCTTCCAGATTGCCATGGAAAAC 1709 Query 43973 ATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 || ||||| ||||||||||||||||| || || || ||||| |||||| Sbjct 1708 ATACATTCAGAAATGTACAGTCTTCTTATTGACACCTACATTAAAGAT 1661 >seq833 Length=14924 Score = 82.4 bits (90), Expect = 6e-11 Identities = 74/93 (80%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 43928 CCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATG 43987 |||||||| || ||||| ||||| ||||| ||| ||| || || |||| ||||| ||| Sbjct 9085 CCAGAAGCTCGTTGTTTCTATGGCTTTCAGATTCTCATTGAGAACGTTCACTCGGAGATG 9026 Query 43988 TACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 ||||| | || ||||| || |||||||||||| Sbjct 9025 TACAGCTTGCTCATAGACACCTACATCAAAGAT 8993 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395724053807725