Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Grus_20japonensis_20[genbank_20GCA_5F002002985.1_202017-02-10] 357,545 sequences; 1,265,634,512 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq151086 233 6e-56 seq75740 181 3e-40 seq10749 140 1e-27 seq81479 113 1e-19 seq10463 89.7 2e-12 seq52800 84.2 7e-11 >seq151086 Length=2859 Score = 233 bits (258), Expect = 6e-56 Identities = 807/1245 (65%), Gaps = 29/1245 (2%) Strand=Plus/Plus Query 349199 GCTATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGT 349258 || || || ||||| || || || || || || || || | ||| | || ||| Sbjct 630 GCAATCGGCATCGACTTGGGCACCACGTACTCCTGCGTGGGTGTCTTCCAGCATGGCAAA 689 Query 349259 GTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACC 349318 || || || || || ||||| || || ||| | || ||||| || || || || ||| Sbjct 690 GTGGAGATCATCGCCAATGACCAGGGCAACCGCACCACGCCCAGCTATGTGGCCTTCACC 749 Query 349319 GAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAAT 349378 || || |||||| | ||||||||| |||| || || || | ||| || || | || Sbjct 750 GATACAGAGCGTCTCATTGGTGATGCTGCCAAGAACCAGGTGGCTATGAACCCTACCAAC 809 Query 349379 ACGGTTTTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGACAAATCTACA---CAA 349435 || | |||||||| ||||| || ||||| | | | | |||| ||||| || Sbjct 810 ACCATCTTTGATGCCAAGCGTCTCATTGGCCGCAAGTATGATGACC---CTACAGTGCAG 866 Query 349436 TCTGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATT 349495 ||||| | || || | || || ||| || || || |||| || || | | Sbjct 867 TCTGACATGAAGCACTGGCCCTTCCGTGTGGTG---AATGAGGGTGGCAAGCCCAAGGTG 923 Query 349496 GAGGTTGAATATAAAGGTGA-ACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGT 349554 | || || || || ||||| | ||||| || || || || || || || ||||| Sbjct 924 CAAGTGGAGTACAAGGGTGAGATGAAAACC-TTCTTCCCAGAGGAGATCAGCTCCATGGT 982 Query 349555 TTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGT 349614 | || |||||||| |||||||| || ||| | || | || ||||||| Sbjct 983 CCTTACCAAGATGAAGGAGATTGCTGAGGCCTATCTGGGGCGCAAGGTGCAGAATGCTGT 1042 Query 349615 TATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAG 349674 || || || || || || || ||||| | ||||| || || ||||||||||||| Sbjct 1043 CATCACCGTGCCTGCTTACTTCAATGACTCTCAGCGCCAGGCCACCAAAGATGCTGGCAC 1102 Query 349675 CATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATA 349734 ||| | || | ||||| | | || || || || ||||| || || || || || || Sbjct 1103 CATCACTGGCCTTAATGTGATGCGTATTATCAACGAGCCCACAGCAGCTGCTATAGCCTA 1162 Query 349735 TGGGCTTGATAAAATGAGTGACC------AAGaaaaaaaTATTCTTATTTTTGATTTAGG 349788 ||| | || || | || || ||| || ||| | || || ||||| || || Sbjct 1163 TGGCTTGGACAAGAAAGGTACCCGGGCTGGAGAGAAGAATGTGCTGATCTTTGACTTGGG 1222 Query 349789 TGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGC 349848 || || ||||| ||||| || | || || |||| || || || ||||| || || | Sbjct 1223 AGGGGGCACTTTCGATGTGTCCATCCTTACCATTGAGGATGGCATCTTTGAGGTGAAGTC 1282 Query 349849 AACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTT 349908 || |||||||| || ||||| ||||| || || ||||| || || | || || || Sbjct 1283 CACAGCTGGTGACACCCATCTGGGTGGGGAGGACTTTGACAACCGCATGGTGAACCACTT 1342 Query 349909 TGTTAAAGAATTTAAGCGTCAAGC-TAAAATTGATATTGGAGATAATCCTAGAGCAATGC 349967 ||| ||||||| |||||| |||| || ||| |||| | ||| ||||| || Sbjct 1343 TGTGGAAGAATTCAAGCGT-AAGCACAAGCGTGACATTGCTGGTAACAAGCGAGCAGTGA 1401 Query 349968 GTCGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTC-CTTATCATCTACTACCCAAACC 350026 | || || | || || ||||| | || ||||| | || | | ||| | || ||| | Sbjct 1402 GGCGACTGCGTACAGCTTGTGAGAGGGCAAAGCGCACTCTCAGC-TCTTCCACACAAGCT 1460 Query 350027 TCTATTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCT 350086 ||||| ||||| || ||| ||| || | || |||| | || ||||| ||||| Sbjct 1461 AGCATTGAGATTGACTCCCTTTTTGAGGGTATTGACTTCTACACTTCCATTACTCGTGCC 1520 Query 350087 CGGTTTGAAGAATTATGTATGGATCTTTTTAGAGCAACAATGGATCCTGTGGAAAAAGTA 350146 || || || || | | ||||| || | | || |||| || ||||| || | Sbjct 1521 CGCTTCGAGGAGCTCAATGCTGATCTCTTCCGTGGCACCCTGGAGCCAGTGGAGAAGGCC 1580 Query 350147 TTAAAAGATGCAAAAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGTGGTTCT 350206 | ||||| || | ||| |||||| | || | || | || ||||| ||| Sbjct 1581 CTGCGTGATGCCAAGCTAGACAAGGGACAGATTCAGGAGATCGTGCTGGTGGGTGGCTCT 1640 Query 350207 ACACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAAC-CTTC 350265 || ||||| || || | ||| || | ||| || || || ||||||||||| | | | Sbjct 1641 ACCCGTATCCCCAAGATCCAAAAGCTGCTACAGGACTTCTTCAATGGCAAAGAGCTCAAC 1700 Query 350266 TAGATCAATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTATTTT 350325 ||| | || || || ||||| |||||||| ||||| |||||||| || ||| |||| | Sbjct 1701 AAGAGC-ATCAACCCTGATGAGGCTGTTGCTTATGGCGCTGCTGTGCAAGCAGCTATCCT 1759 Query 350326 ATCTGGAAATAAGAGTTCTAAAATTG---ATGATCTATTACTACTAGATGTAACTCCACT 350382 ||| | ||| ||| | | || | ||||| | || | ||||| || || || Sbjct 1760 CATGGGAGACAAG---TCTGAGAATGTGCAGGATCTGCTGCTGTTGGATGTCACCCCTCT 1816 Query 350383 TTCGCTTGGATTAGAAACTTCTGGTGAAGTAATGACTGTTCTTAT 350427 || || || | || || |||||| ||| ||||| | ||| || Sbjct 1817 GTCCCTGGGCATCGAGACAGCTGGTGGAGTGATGACCGCTCTCAT 1861 >seq75740 Length=3125 Score = 181 bits (200), Expect = 3e-40 Identities = 368/539 (68%), Gaps = 8/539 (1%) Strand=Plus/Minus Query 349770 TTCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGG 349829 ||||||| ||||| | || ||||| || |||||||| ||| | || || ||||||| | Sbjct 1609 TTCTTATCTTTGACCTTGGAGGTGGCACCTTTGATGTGTCAATTCTGACTATTGAAGATG 1550 Query 349830 GAATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATA 349889 | || ||||| || ||| | ||||| ||||| || || | ||||||||||| ||||| | Sbjct 1549 GCATCTTTGAGGTGAAATCCACTGCAGGTGACACTCACTTGGGTGGAGAAGACTTTGACA 1490 Query 349890 ATCGTCTCGTTTCGCATTTTGTTAAAGAATTTAAGCGTCAAGC-TAAAATTGATATTGGA 349948 | || | || || || | ||||| ||||| ||||| || | || || | Sbjct 1489 ACCGCATGGTCAACCACTTCATCGCTGAATTCAAGCG-CAAGCACAAGAAAGACATCAGC 1431 Query 349949 GATAATCCTAGAGCAATGCGTCGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTA 350008 || || |||||| | || ||||| | ||||| || || ||||| ||||| | | Sbjct 1430 GAGAACAAGAGAGCAGTTCGCCGCCTCCGCACTGCCTGCGAGCGTGCAAAGCGCACTCTG 1371 Query 350009 TCATCTACTACCCAAACCTCTATTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTT 350068 || |||| || || || |||||||||||||||||| ||| || | || |||| Sbjct 1370 TCGTCTAGCACGCAGGCCAGTATTGAAATTGATTCTCTCTATGAGGGTATTGACTTCTAC 1311 Query 350069 TCATCTATTACACGTGCTCGGTTTGAAGAATTATGTATG--GATCTTTTTAGAGCAACAA 350126 |||| ||||| | ||||| |||||||| || | | || || || | | || Sbjct 1310 ACATCCATTACCAGAGCTCGCTTTGAAGA--GCTGAACGCCGACCTGTTCCGTGGCACCC 1253 Query 350127 TGGATCCTGTGGAAAAAGTATTAAAAGATGCAAAAATGTCCAAAAATCAGATTGATGAAG 350186 |||||||||||||||| | | ||||| || | |||| ||||| | || Sbjct 1252 TGGATCCTGTGGAAAAGGCCCTGCGGGATGCCAAGCTCGACAAATCGCAGATCCACGACA 1193 Query 350187 TAGTTTTAGTTGGTGGTTCTACACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTT 350246 | || | |||||||| ||||| ||||| ||||| |||| | | || || || | Sbjct 1192 TCGTGCTGGTTGGTGGGTCTACTCGTATCCCAAAGATTCAGAAACTGCTGCAAGATTTCT 1133 Query 350247 TTAATGGCAAAGAAC-CTTCTAGATCAATTAATCCAGATGAAGCTGTTGCATATGGTGC 350304 | ||||||||||| | | ||| | || ||||| ||||| ||||| || |||||||| Sbjct 1132 TCAATGGCAAAGAGCTGAACAAGAGC-ATCAATCCTGATGAGGCTGTGGCTTATGGTGC 1075 Score = 114 bits (126), Expect = 4e-20 Identities = 116/151 (77%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 349598 ACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCA 349657 || || ||| | ||||| | ||||| |||||||| || |||||| | |||||| ||| Sbjct 1883 ACTGTTACTAACGCTGTAGTGACTGTGCCAGCCTACTTCAATGATTCTCAGCGTCAGGCA 1824 Query 349658 ACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACT 349717 |||||||||||||| | |||||| ||| | ||||| || |||| || ||||| || || Sbjct 1823 ACAAAAGATGCTGGAACCATTGCAGGGCTCAATGTACTGCGAATTATCAATGAGCCGACA 1764 Query 349718 GCTGCAGCAATTGCATATGGGCTTGATAAAA 349748 ||||| || || || ||||| || || |||| Sbjct 1763 GCTGCTGCGATAGCCTATGGTCTAGACAAAA 1733 >seq10749 Length=40418 Score = 140 bits (154), Expect = 1e-27 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || |||||||| || || || || || || || || || ||||| | || || |||||| Sbjct 40069 AGCACAAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCT 40128 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || || ||||||||||| || | ||||||||||| ||||| ||||| || ||| Sbjct 40129 TCCAGCTGCTTCCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCC 40188 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 || || || ||||| || || ||||| | ||| || ||||| || || || | ||| Sbjct 40189 TGGATCTTGGCTTTCACGTTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTC 40248 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || || || ||||| |||||||| Sbjct 40249 TTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 40280 >seq81479 Length=5653 Score = 113 bits (124), Expect = 1e-19 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 350177 ATTGATGAAGTAGTTTTAGTTGGTGGTTCTACACGTATTCCAAAAGTTCAACAGTTACTA 350236 |||||||| | ||| | |||||||| ||||| || || || ||| | || || || | Sbjct 4034 ATTGATGAGATTGTTCTTGTTGGTGGCTCTACCCGCATCCCCAAAATACAGCAACTAGTT 3975 Query 350237 TCTGAGTTTTTTAATGGCAAAGAACCTTCTAGATCAATTAATCCAGATGAAGCTGTTGCA 350296 |||||||| ||||| |||||||||||| | |||||||||||||| ||||| || Sbjct 3974 AAGGAGTTTTTCAATGGGAAAGAACCTTCTCGTGGCATTAATCCAGATGAGGCTGTAGCT 3915 Query 350297 TATGGTGCTGCTGTTCAGGC 350316 |||||||| ||||||||||| Sbjct 3914 TATGGTGCGGCTGTTCAGGC 3895 Score = 111 bits (122), Expect = 5e-19 Identities = 88/106 (83%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 349608 ATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATG 349667 |||||||| ||||||| ||||||||||| |||||||| |||||| || |||||||||| Sbjct 4995 ATGCTGTTGTTACTGTGCCAGCCTATTTCAATGATGCTCAGCGTCAGGCTACAAAAGATG 4936 Query 349668 CTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACC 349713 |||| | ||||| ||||| ||||| | ||||| |||||||| || Sbjct 4935 CTGGTACTATTGCTGGGTTGAATGTGATGAGAATTATTAATGAGCC 4890 Score = 107 bits (118), Expect = 6e-18 Identities = 128/173 (74%), Gaps = 3/173 (2%) Strand=Plus/Minus Query 349715 ACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTT 349774 || ||||| || ||||| ||||| || || || ||| || ||| || ||||| || Sbjct 4811 ACAGCTGCTGCCATTGCCTATGGACTGGACAA---GAGAGAGGGAGAGAAGAATATCCTC 4755 Query 349775 ATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATT 349834 | ||||| || |||||||| || |||||||| || || || ||| |||| | ||| | Sbjct 4754 GTGTTTGACTTGGGTGGTGGAACCTTTGATGTCTCCCTCCTCACAATTGACAATGGAGTC 4695 Query 349835 TTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGA 349887 || |||||| || ||| |||||| || ||||| ||||||||||| ||||| Sbjct 4694 TTCGAAGTTGTGGCTACTAATGGTGACACTCATCTGGGTGGAGAAGACTTTGA 4642 >seq10463 Length=44968 Score = 89.7 bits (98), Expect = 2e-12 Identities = 73/89 (82%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 140548 CTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGA 140607 ||||||||||||| || ||||| | || || |||||||| || || || |||||||| | Sbjct 439 CTTTTTGAATATTGTAGTCAGACAGCGTGCGTCCATCTTCTAGCTGCTTACCAGCAAAAA 380 Query 140608 TTAGACGTTGCTGATCAGGAGGAATTCCT 140636 | || || ||||||||||||||||| ||| Sbjct 379 TCAGTCGCTGCTGATCAGGAGGAATGCCT 351 >seq52800 Length=5892 Score = 84.2 bits (92), Expect = 7e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 223719 ATGCCTCATCTCTTGATATTAATTCATTTGAAAATGTTAATCCAGGCATTAAACCTCTCT 223778 || |||| ||||| || | |||||| ||||| || | |||||||||||| ||||| | Sbjct 507 ATACCTCGTCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTT 448 Query 223779 TTTTCATCCAAAATATTGCGCAAAAAGCTCCTGaaaaaaaTATACCTTCTACACAAGCAA 223838 | |||| |||||| |||| ||||| || ||||| || || ||||| || |||| Sbjct 447 TCTTCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAA 388 Query 223839 ACGCTACTA 223847 | ||||||| Sbjct 387 AAGCTACTA 379 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1508312950933635