Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Grus_20japonensis_20[genbank_20GCA_5F002002985.1_202017-02-10] 357,545 sequences; 1,265,634,512 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq251720 185 1e-41 seq113191 114 2e-20 seq251719 100 4e-16 >seq251720 Length=1010 Score = 185 bits (204), Expect = 1e-41 Identities = 262/367 (71%), Gaps = 1/367 (0%) Strand=Plus/Minus Query 13671 CCCCTGAGCCTGGAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCACCACAAG 13730 || ||||| | ||| |||| ||||| || ||||||||||| || || |||||| |||| Sbjct 619 CCACTGAGTCAGGAGGAGGCAGAGTTCCCTATCGCCTACTCCATGGTCATCCACAACAA- 561 Query 13731 ATCGAGATGTTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGTC 13790 ||||||||||||||||| |||||| || || | |||||||| |||||| ||||||||||| Sbjct 560 ATCGAGATGTTCGAGCGGCTCCTGCGGTCCCTGTACGCCCCTCAGAACATCTACTGCGTC 501 Query 13791 CACGTGGACTCCAAGTCCGGCGACGAGTTCATCCGGGGCGTCTCGGCCATCGCCAGGTGC 13850 ||| | ||| ||||||| | || ||| || ||| |||||||| ||| Sbjct 500 CACATTGACAGCAAGTCCCCGGCCGCCTTCCAGGAGGCCGTGCGGGCCATCGTAGCTTGC 441 Query 13851 TTCCCTAACGTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCTCCTGGAGTCGC 13910 ||||| || || |||| ||| ||| | | ||||| || | ||||||| || Sbjct 440 TTCCCCAATGTCTTTGTGGCTAGCCGCCTGGAAAAGGTGGTCTATGCCTCCTGGTCCCGG 381 Query 13911 GTGCAGGCCGACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCAAGTGGAGGTAC 13970 ||||||||||||||| ||||||| ||||||| ||| || ||| | ||| Sbjct 380 CTGCAGGCCGACCTCAACTGCATGCAGGACCTGTTGCAGAGCCCTGTGCCATGGCGCTAC 321 Query 13971 CTGCTCAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCGGGCG 14030 | |||||| ||||| | || ||||| |||| ||||| |||||||| || | Sbjct 320 GTCCTCAACACCTGCGGCACAGATTTCCCCATCAAAACCAATGCCGAGATCGTCCGTGTC 261 Query 14031 CTGAAGG 14037 ||||||| Sbjct 260 CTGAAGG 254 >seq113191 Length=27860 Score = 114 bits (126), Expect = 2e-20 Identities = 265/390 (68%), Gaps = 36/390 (9%) Strand=Plus/Plus Query 13683 GAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCACCACAAGA---TCGAGATG 13739 || |||| || || ||||||||||| || ||| || |||||| |||||| Sbjct 17012 GAGGAGGCCGCTTTCCCCATCGCCTATG---TCATGACCCTGCACAAGGAGTTCGAGACC 17068 Query 13740 TTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGTCCACGTGGAC 13799 || ||||| ||| | ||||| | ||| || || ||| ||||||||||||| ||||| Sbjct 17069 TTTGAGCGGCTCTTCAGGGCGGTGTACATGCCCCAAAACGTCTACTGCGTCCATGTGGAT 17128 Query 13800 TCCAAGTCCGGCGACGAGTTCAT--CCGG--GGCGTCTCGGCCATCGCCAGGTG-----C 13850 ||||| ||| || || | | ||| |||| | || |||| |||| | Sbjct 17129 GCCAAG----GCGCCG-GTCCCTTTCCGTCAGGCG----GTGCAGCGCCTGGTGGGCTGC 17179 Query 13851 TTCCCTAACGTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCTCCTGGAGTC-- 13908 ||||| |||| ||| ||| | || | | ||||| || ||| || ||| Sbjct 17180 TTCCCCAACGCCTTCCTCGCCTCCAGGGCGGAGCGGGTGGTCTATGGC----GGCGTCTC 17235 Query 13909 --GCGTGCAGGCCGACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCAAGTGGAG 13966 || ||| ||||||||| ||||||| |||||||| ||||| ||| ||| | Sbjct 17236 CCGCCTGCGAGCCGACCTCCACTGCATGAGGGACCTGGTGGCCTCGGACGTGCC-TGGCG 17294 Query 13967 GTACCTGCTCAACCTGTGCGGGATGGA--CTTCCCGCTCAAGACCAACCTGGAGATCGTG 14024 |||||||||||| |||||| ||| |||||| | |||||||||| ||||||||| Sbjct 17295 CTACCTGCTCAACACCTGCGGGCAGGATGCTTCCC-TTGAAGACCAACCGGGAGATCGTC 17353 Query 14025 CGGGCGCTGAAGGCCCTGGGCGGCAAGAAC 14054 ||| |||||||| ||| || || |||||| Sbjct 17354 CGGATGCTGAAGGGCCTCGGTGGGAAGAAC 17383 >seq251719 Length=519 Score = 100 bits (110), Expect = 4e-16 Identities = 214/317 (68%), Gaps = 2/317 (1%) Strand=Plus/Minus Query 14279 CACGTACAGCCCCGACGAGCACCTGTGGGCCACCGTGCAGAGAATGTACGGGACGCCCGG 14338 ||| |||||||| ||||||||| | ||||||||| | | | ||| ||| ||| || Sbjct 519 CACCTACAGCCCTGACGAGCACGTCTGGGCCACCCTCAACCGCATGCCCGGCGTGCCAGG 460 Query 14339 GGGGATCCCCGTTCACGTCAAGTACGACACCTCGGACATGTGGGCCAAGGTCAGGTTCGT 14398 | || ||| ||| ||||| | | | |||||||| ||| | | | | || Sbjct 459 CGCCATGCCCCAGAACGACAAGTTCCAGCTCCCGGACATGAACGCCCTGCCCCGCCTGGT 400 Query 14399 CAAGTGGCACTACTACGAGGGGGATATCAAGAAAGGGGCCCTGTACCCGCCTTGCGACGG 14458 |||||||| ||| ||||| || | || || ||||| | ||||| || ||| ||| Sbjct 399 GAAGTGGCAGTACCTGGAGGGCGACACCAGCAAGGGGGCGCCCTACCCACCCTGCACCGG 340 Query 14459 CATCCACGTCCACGCCATCTGCATCTTCGGGTCCGGCGACGTGAAGTGGCTGAAG-AGCG 14517 | ||| | |||| ||||||||| |||| ||||||||| ||| || | ||| Sbjct 339 CCAGCACCAGCGCGCCGTCTGCATCTACGGGGTGGGCGACGTGCCCTGGATGCTGCAGCA 280 Query 14518 TCCCGCACCTGTTCGCCAACAAGTTCGACGACGAGACGGACGAGTTCGCCGTGCGCTGTC 14577 | | ||||| || ||||||||||||||| | | |||||| ||| | | |||| Sbjct 279 GCAC-CACCTCTTGGCCAACAAGTTCGACCCCCTGGTGGACGATGCCGCAATCCAGTGTC 221 Query 14578 TGGACGAGGACGTGCGC 14594 | || ||| || ||||| Sbjct 220 TCGAGGAGCACCTGCGC 204 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 655795088659200