Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Grus_20japonensis_20[genbank_20GCA_5F002002985.1_202017-02-10] 357,545 sequences; 1,265,634,512 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq41976 120 2e-22 seq64392 96.9 3e-15 >seq41976 Length=14171 Score = 120 bits (132), Expect = 2e-22 Identities = 144/189 (76%), Gaps = 5/189 (3%) Strand=Plus/Plus Query 30223 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30282 ||| || |||| |||||||| || |||| ||||||||| || ||||| ||||||| || Sbjct 11740 CATATCTTTGTATTCTGCTCCAAAGTGCCGCCACTGGAAACCATACACTGGTCCCAAATC 11799 Query 30283 TCCCTCTTCCCTG-TGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 30341 ||||| || ||| | || ||| ||| ||| |||| || || | || || || || | Sbjct 11800 CCCCTCCTCTCTGGTACT-GAAACCCTGCTTATCCAGGAACTCACGTGATCCATTAGCAT 11858 Query 30342 CCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACC 30401 |||| |||||||| ||||| ||||||||||||| | ||||| || || || ||||| | Sbjct 11859 CCCAAATCTTTACACCCTTTGCAGAGAGCTCTTTAGCATTTGTAGAACC-CT-ACGAAAC 11916 Query 30402 ACAG-CAGC 30409 |||| |||| Sbjct 11917 ACAGACAGC 11925 >seq64392 Length=12286 Score = 96.9 bits (106), Expect = 3e-15 Identities = 86/108 (80%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 110401 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 110460 || |||||||||||||| |||| || || |||||| | | ||| | |||||| || || Sbjct 9211 TTGAGCTCCCTGCTGAGCACTATATTAATTCTGTCTTTTAAAGGACGATTCTTCTCAGGA 9270 Query 110461 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 110508 ||||||||||| |||||| |||||||||||| | ||||| || ||| Sbjct 9271 ATGGAGAACCAGGTCTTTTTACCCATTATCAGTGCATTCTGTTTACCT 9318 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404539870054140