Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Grus_20japonensis_20[genbank_20GCA_5F002002985.1_202017-02-10] 357,545 sequences; 1,265,634,512 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq10749 123 6e-23 seq21057 105 2e-17 seq304751 95.1 3e-14 seq7507 95.1 3e-14 >seq10749 Length=40418 Score = 123 bits (136), Expect = 6e-23 Identities = 142/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| ||||| || || |||||||| || |||| ||||| || | || || | ||||| Sbjct 40068 CAGCACAAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATC 40127 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||||||||| ||||| || | || || || || ||||| ||||||||||| Sbjct 40128 TTCCAGCTGCTTCCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTC 40187 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| ||||| || |||||||| || || || || | ||||| || Sbjct 40188 CTGGATCTTGGCTTTCACGTTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGT 40247 Query 225681 CTTGCCCGTCA 225691 |||||| |||| Sbjct 40248 CTTGCCTGTCA 40258 Score = 98.7 bits (108), Expect = 2e-15 Identities = 95/121 (79%), Gaps = 1/121 (1%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| ||||| || ||||||||||| || |||| ||||| |||| || || | |||||| Sbjct 40296 CAGCACAAGATGCAGAGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATC 40355 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAAT-ACCTTCCTTGT 225619 ||| |||||||| ||||||||||| | | || || ||||| ||||| ||||||||| Sbjct 40356 TTCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGATCGGGGGGAATGGACTTCCTTGT 40415 Query 225620 C 225620 | Sbjct 40416 C 40416 >seq21057 Length=1032 Score = 105 bits (116), Expect = 2e-17 Identities = 94/118 (80%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 7727 TTCTAGGGTTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTA 7786 ||| ||| | |||||| || | ||||| | || ||||||||||||| ||||||||| || Sbjct 887 TTCAAGGATGGGTAAGGTTTTGCGCGTTTTGTCGAATTAAACCACATGCTCCACCGCATA 828 Query 7787 TACAATCTTCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGA 7844 || | || ||||| || |||||||||| || |||||| ||||||| |||||| ||| Sbjct 827 TATAGGCTCCCGTCTATTCCTTTGAGTTTGAATCTTGCGATCGTAGTCCTCAGGCGGA 770 >seq304751 Length=374 Score = 95.1 bits (104), Expect = 3e-14 Identities = 132/184 (72%), Gaps = 1/184 (1%) Strand=Plus/Minus Query 371363 TAAATGGTAATTTATGCATAGATAAACCAGGTACTCTCATATTAAATATCGTAGTAATAA 371422 |||| | |||||||||||| | | || || |||||||||| || || || ||||| Sbjct 195 TAAAAGAGAATTTATGCATAAACATTCCTGGAGCTCTCATATTTAAAATAGTTACAATAA 136 Query 371423 AGTTTATAGCGCCTAGAAGAGAAG-ATATACCTGCAAGATGTAAACTAAATATTGCTAAA 371481 | |||||||| |||| || ||||| | ||||| | |||||||||||| || |||||| Sbjct 135 AATTTATAGCACCTAAAATAGAAGCAAGCCCCTGCTAAATGTAAACTAAAAATAGCTAAA 76 Query 371482 TCGACGGAACCGCCGGAGTGAGCTACAATAGAACTTAACGGCGGGTAAACTGTTCAGCCG 371541 || || ||| || || || ||| | | ||| || || || |||||||| || Sbjct 75 TCTACAGAAGGTCCTGAATGTGCTTGTAATGCTGATAATGGAGGATATACTGTTCATCCT 16 Query 371542 GTTC 371545 |||| Sbjct 15 GTTC 12 Score = 95.1 bits (104), Expect = 3e-14 Identities = 85/104 (82%), Gaps = 2/104 (2%) Strand=Plus/Minus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 |||||| |||||||||||||| || | ||||||||| | | |||||| ||||| || | Sbjct 369 TTCAGGGTGACCAAAAAATCAAAAAAGATGTTGATATAAAACAGGATCTCCTCCTCCAGC 310 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA-AACA 370774 |||||| ||||| ||||||||||||| | ||| ||||| |||| Sbjct 309 AGGATCATAAAAG-TAGTATTAAAATTACGATCTGTTAATAACA 267 >seq7507 Length=8331 Score = 95.1 bits (104), Expect = 3e-14 Identities = 129/181 (71%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 7551 CCAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTAT 7610 |||| | || || || || | || || || ||||| || || || ||||| | || || Sbjct 4435 CCAAATCTATAATGTAATCGTCACCGCCCACGCCTTCGTAATAATCTTCTTCATAGTCAT 4376 Query 7611 GCCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGA 7670 || | ||||| || || |||||||||||| | || || | || |||||||| || || Sbjct 4375 ACCCATCATGATTGGAGGGTTCGGAAATTGACTAGTCCCACTTATAATTGGTGCCCCCGA 4316 Query 7671 TATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTNNTTCT 7730 || || || ||| | | ||||||||||| || ||| |||| || || ||||| | || Sbjct 4315 CATAGCATTCCCACGCATAAACAATATAAGCTTCTGACTACTCCCTCCATCCTTCCTACT 4256 Query 7731 A 7731 | Sbjct 4255 A 4255 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1187068160536230