Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Grus_20japonensis_20[genbank_20GCA_5F002002985.1_202017-02-10] 357,545 sequences; 1,265,634,512 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq41976 98.7 8e-16 seq64392 96.9 3e-15 >seq41976 Length=14171 Score = 98.7 bits (108), Expect = 8e-16 Identities = 126/167 (75%), Gaps = 5/167 (3%) Strand=Plus/Plus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTG-TGCTCGAA 30075 || |||| ||||||||| || ||||| ||||||| || ||||| || ||| | || ||| Sbjct 11762 AAGTGCCGCCACTGGAAACCATACACTGGTCCCAAATCCCCCTCCTCTCTGGTACT-GAA 11820 Query 30076 GCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTC 30135 ||| ||| |||| || || | || || || || ||||| |||||||| ||||| | Sbjct 11821 ACCCTGCTTATCCAGGAACTCACGTGATCCATTAGCATCCCAAATCTTTACACCCTTTGC 11880 Query 30136 GGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAG-CAGC 30181 ||||||||||| | ||||| || || || ||||| ||||| |||| Sbjct 11881 AGAGAGCTCTTTAGCATTTGTAGAACC-CT-ACGAAACACAGACAGC 11925 >seq64392 Length=12286 Score = 96.9 bits (106), Expect = 3e-15 Identities = 86/108 (80%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 114284 TTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 114343 || |||||||||||||| |||| || | |||||| | | ||| | |||||| || || Sbjct 9211 TTGAGCTCCCTGCTGAGCACTATATTAATTCTGTCTTTTAAAGGACGATTCTTCTCAGGA 9270 Query 114344 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391 ||||||||||| |||||| |||||||||||| | ||||| |||||| Sbjct 9271 ATGGAGAACCAGGTCTTTTTACCCATTATCAGTGCATTCTGTTTACCT 9318 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404393311489870