Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Grus_20japonensis_20[genbank_20GCA_5F002002985.1_202017-02-10] 357,545 sequences; 1,265,634,512 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq305546 286 4e-72 seq313677 168 7e-37 seq52800 102 8e-17 >seq305546 Length=223 Score = 286 bits (316), Expect = 4e-72 Identities = 186/203 (92%), Gaps = 1/203 (0%) Strand=Plus/Plus Query 8410 GGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCAAAAGCCA 8469 |||||||||| |||||||||||||||||||| |||||||||||||||||||| ||| Sbjct 1 GGGTTCAAGCAATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGATTACAGGCATGCACCA 60 Query 8470 CCACGCCA-AGCTAATTTTTGTATTTTTAGTAGAGAGAGGGTTTCACCATGTTGGCCAGG 8528 ||||||| ||||||||||||||||||||||||||| |||||||||||||||||| |||| Sbjct 61 CCACGCCCCAGCTAATTTTTGTATTTTTAGTAGAGACAGGGTTTCACCATGTTGGTCAGG 120 Query 8529 CTGGTCTCGAACTCCTGACCTCATGTGATCCACCTGCCTCGGCCTCCCAAAGTGCTGGGA 8588 ||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| | || Sbjct 121 CTGGTCTCGAACTCCTGACCTCAGGTGATCCACCTGCCTCGGCCTCCCAAACTGCCGAGA 180 Query 8589 TTACAGGCATGAGCCACCGCGCC 8611 ||||| |||||||||||||| || Sbjct 181 TTACAAGCATGAGCCACCGCACC 203 >seq313677 Length=360 Score = 168 bits (186), Expect = 7e-37 Identities = 143/175 (82%), Gaps = 1/175 (1%) Strand=Plus/Minus Query 8349 CTCTGTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCCGCTCACTGCAACCTCCGCCTCC 8408 |||||| || |||||| | ||||| ||| |||| |||| ||||||||||| ||||| Sbjct 175 CTCTGTCGCACAGGCTAGTGTGCAATGGTGCAATCTTGGCTCGCTGCAACCTCCACCTCC 116 Query 8409 CGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCAAAAGCC 8468 | |||||||| |||||| ||||||||||| ||||||||||||||||||||| | | Sbjct 115 CAGGTTCAAGAGGCTCTCCTCCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCACTGGTC 56 Query 8469 ACCACGCCAAGCTAATTTTTGTATTTTTAGTAGAGAGAGGGTTTCACCATGTTGG 8523 |||| ||| |||||||||| | | ||||||||||| ||||||||||||||||| Sbjct 55 ACCATGCCTGGCTAATTTTT-TGTATTTAGTAGAGATTGGGTTTCACCATGTTGG 2 >seq52800 Length=5892 Score = 102 bits (112), Expect = 8e-17 Identities = 100/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 23533 TCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTTTA 23592 || || ||||| || | |||||||||||| || | ||| ||||||||||||| ||| || Sbjct 502 TCGTCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCTTC 443 Query 23593 ATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCC 23652 | |||||| |||| ||||| || || |||||||| || || || || || ||||| || Sbjct 442 AGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAGCT 383 Query 23653 ACAAGACGT 23661 || | |||| Sbjct 382 ACTACACGT 374 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 519157307163000