Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haliaeetus_20albicilla_20[refseq_20GCF_5F000691405.1_202014-05-15] 50,905 sequences; 1,133,549,865 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq2161 125 9e-24 seq43919 114 2e-20 seq41731 114 2e-20 seq39853 84.2 3e-11 >seq2161 Length=8126 Score = 125 bits (138), Expect = 9e-24 Identities = 144/194 (74%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 9228 TATTTCTTATTAGATACTTCCAAAAGCTGTAACAGATGCAAGAACAGATTGATGATATCC 9287 ||||| |||||| || |||| | | | ||| || ||||||||||||||||| ||| Sbjct 1038 TATTTTTTATTAAATGTCTCCAGTAAACGCAGCAGGTGTAAGAACAGATTGATGATGTCC 1097 Query 9288 AAGTAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAGTGAG 9347 ||||||| |||||| | || || | ||| |||||||| || | || || || || | Sbjct 1098 AAGTAGAGATTGATTGCAGCCAATATATATTCTTCAGGGGATAATTTGTGCATGAGCAAA 1157 Query 9348 TGCGTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAAAAGCAGACAGGACCAGC 9407 ||||||||||| ||||| ||||| ||||| | ||| || ||| ||||| | |||| | Sbjct 1158 TGCGTGTCATAAATAATAAATCCACAGAACAGAAGAGCTCCAGCAGCAGCAAACACCAAC 1217 Query 9408 TCCACTGTTTCACT 9421 |||| || ||||| Sbjct 1218 TCCATCGTCTCACT 1231 Score = 107 bits (118), Expect = 3e-18 Identities = 112/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 9456 AAAATCCACAAAGTAACAAACAATCCTGCTCCAAGTTTACTGAAATCTCTCTTTGATTGT 9515 |||||| ||| | |||| | |||||||||| ||| ||||| ||||||||||| || Sbjct 2346 AAAATCATCAATATGACAACATACCCTGCTCCAAATTTGCTGAAGTCTCTCTTTGACTGC 2405 Query 9516 AGAGTATATGCAGTCAGAGCAAGAAACACTGCAGTAGTCAGCATGAAAGCTTGCATAACG 9575 | |||||||| ||||| ||||||| || |||||||| || || || ||||||| || Sbjct 2406 AAGGTATATGCCGTCAGTCCAAGAAATACAGCAGTAGTAAGAATAAAGGCTTGCAACACA 2465 Query 9576 ACATGCACATCATAGAAAGTAACAACA 9602 | ||||||||||||| | || ||| Sbjct 2466 ATGGACACATCATAGAAACTCACTACA 2492 >seq43919 Length=14035 Score = 114 bits (126), Expect = 2e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| ||||| ||||| | ||| ||||| || || ||||| ||||| ||||| | ||| | Sbjct 8019 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCT 8078 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | ||||||||||| | ||||| || || |||||||| || ||||| ||||| ||||| | Sbjct 8079 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAAG 8138 Query 36300 CAATAAGTCTCTCTCC 36315 ||| | |||||| || Sbjct 8139 CAACCACTCTCTCACC 8154 >seq41731 Length=36803 Score = 114 bits (126), Expect = 2e-20 Identities = 98/121 (81%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| |||||||| || | |||||| ||||| |||||||| ||||||| || | || | Sbjct 33846 CCTCATCTCTACTGATGAGTTCGTTAGAAAAAGTGAGTCCAGGCATTAATCCCCTTTTCT 33905 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | |||||||| || || ||||| || ||||||||||| |||||||| ||||| ||||| | Sbjct 33906 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAG 33965 Query 36300 C 36300 | Sbjct 33966 C 33966 >seq39853 Length=31101 Score = 84.2 bits (92), Expect = 3e-11 Identities = 118/166 (71%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 66799 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAA 66858 |||| |||| ||| || ||||||||||| | ||| || || || || || || || | | Sbjct 2618 CACTGAATACTTTCTTAGTTTCTTTGTGCAAATTGGACACTGCAATCCTTGCTGCCAGGA 2559 Query 66859 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 66918 | || || || || |||| || || || || || |||| || ||||| || |||| Sbjct 2558 TAGCGTAGTCAGGGTGTTTGGTGGTCAGGGTTGCGGCCGTTTCAGCAGCCAGCGTATCCA 2499 Query 66919 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 66964 ||| |||||||| || ||| | || | ||| || || || ||||| Sbjct 2498 GTTCCACCGTTGTGACACCACTGTACAGTCCCTGAATCACTTTCAT 2453 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657753996420200