Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haliaeetus_20albicilla_20[refseq_20GCF_5F000691405.1_202014-05-15] 50,905 sequences; 1,133,549,865 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq16959 150 3e-31 seq9433 111 2e-19 >seq16959 Length=65372 Score = 150 bits (166), Expect = 3e-31 Identities = 221/309 (72%), Gaps = 3/309 (1%) Strand=Plus/Minus Query 8679 GGAACGCGGCCAACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCAC 8738 |||| || | || ||||| ||||| |||||| | |||| || ||| | | ||| Sbjct 5319 GGAAAGCAGTGAAAGGACAGCCTTTCACGTTGTTGCAGATGAGCTTCTGTAAGGAGGCAG 5260 Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798 | |||| || |||| ||||| | ||| || |||||||| || |||||||| | |||| Sbjct 5259 TATTGATTATTTCAAAGCCCACTTTTCCACCAAAGGTGCTAGGCTTCCAGTACTCAGGGG 5200 Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858 ||||||| | || |||| || ||||| || || ||||| || || | ||| | || Sbjct 5199 AGCAGATAGCATTTCCCATCAGTCCTTTCAGAGAGAACGGTGCTCCAATCTCCACCATTG 5140 Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAAT-CCGGTGTACAACTCC 8917 | ||||| ||||| || || || |||||||| || ||||| || | ||||| |||| Sbjct 5139 TTTCACCAAAGATTGCACCTGGTCGTGGCTTTTCTAC-AAGAAGGCCTGGGTACAGCTCC 5081 Query 8918 ACAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTGT- 8976 | ||| || ||||| || ||||| | ||||| || || ||||| ||||||||||| Sbjct 5080 ATAGCATCAATGTCGCCATAAAGCTCTTCCAGTTCAGCTGCCATTTCTTTTTCTCCTGTA 5021 Query 8977 TTTATTAAT 8985 ||||| || Sbjct 5020 ATTATTGAT 5012 Score = 116 bits (128), Expect = 5e-21 Identities = 171/242 (71%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 9622 ATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGA 9681 ||||| | | | || || ||||| || || ||| ||| |||||||| || ||||||| Sbjct 3313 ATGAGCCTACTAGTTTGGAACAGCTGCTCATCATCCCACTCTGGATGCTCCTGTTTCAGG 3254 Query 9682 ACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGC 9741 | || || || | |||||||||||| ||||| || ||||| |||||||| | || || Sbjct 3253 ATGTCACAGACCCGGTTGTGTTCCCTCAGCCATATTGTAGCATACATCATCAAGCCTGGG 3194 Query 9742 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGA 9801 |||| || || |||| || || |||| | ||| | ||| || || | ||||| Sbjct 3193 ACCAAACCGAACACCTCCTGCCCAACAGAAAACTGCAGGTGTTCAGGTACATGAGGAGGG 3134 Query 9802 TAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATC 9861 |||||||| | |||| || || || | || ||||||||||| || || || ||| Sbjct 3133 TAGATCATATCTGCCTGAGTGTCCTTCACTGTTGGTGGATACATTTCTCCATCGATCATC 3074 Query 9862 TG 9863 || Sbjct 3073 TG 3072 >seq9433 Length=18633 Score = 111 bits (122), Expect = 2e-19 Identities = 144/199 (72%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798 |||| || || |||| || ||||| ||||| || |||||||||||||| | |||| Sbjct 3836 TCTTAACTATGTCAAAGCCAGTTTCTCCACCGAATGTACTGGGTTTCCAGTACTCTGGGG 3777 Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858 |||||||| ||| | | || || || |||||||||||||| || | ||| | |||| Sbjct 3776 AGCAGATGGGGTTTCCAAGAAGCCCCTTCAGGGAAAACGGAGCTCCGATCTCCACCATGC 3717 Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918 | || || || || | ||||| |||| || || | || || || | || ||||||| Sbjct 3716 TTTCCCCAAAAATACCATTGGGTTGGGGTTTCTCAAGCAGCAAGCCCGGATAAAACTCCA 3657 Query 8919 CAGCCTCGATGTCTCCGTA 8937 ||| || |||||||| || Sbjct 3656 GAGCATCAATGTCTCCATA 3638 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708073956813200