Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haliaeetus_20albicilla_20[refseq_20GCF_5F000691405.1_202014-05-15] 50,905 sequences; 1,133,549,865 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq16959 140 5e-28 seq9433 109 8e-19 >seq16959 Length=65372 Score = 140 bits (154), Expect = 5e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 9739 GTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGAACATCGCAGACC 9798 ||||| |||| |||||| ||| |||| || || || || ||||| || | || |||||| Sbjct 3301 GTTTGGAACAGCTGCTCATCATCCCACTCTGGATGCTCCTGTTTCAGGATGTCACAGACC 3242 Query 9799 CTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGCACTAAACCAAAC 9858 | ||||||||| ||||||||||| || || |||||||| || || || || ||||| ||| Sbjct 3241 CGGTTGTGTTCCCTCAGCCATATTGTAGCATACATCATCAAGCCTGGGACCAAACCGAAC 3182 Query 9859 ACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCATACAGCATATGC 9918 || || | ||| || | ||| |||| | || || || | || | || | ||||| Sbjct 3181 ACCTCCTGCCCAACAGAAAACTGCAGGTGTTCAGGTACATGAGGAGGGTAGATCATATCT 3122 Query 9919 ACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAATAACCTG 9968 |||| || || || || || || ||||||||||| || || || | ||| Sbjct 3121 GCCTGAGTGTCCTTCACTGTTGGTGGATACATTTCTCCATCGATCATCTG 3072 Score = 132 bits (146), Expect = 7e-26 Identities = 207/296 (70%), Gaps = 0/296 (0%) Strand=Plus/Minus Query 8880 GGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGG 8939 |||| || | || ||||| || ||||| ||| || ||||| ||| | || || | Sbjct 5319 GGAAAGCAGTGAAAGGACAGCCTTTCACGTTGTTGCAGATGAGCTTCTGTAAGGAGGCAG 5260 Query 8940 TTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGG 8999 | || | || || || || || | || || |||||||| || ||||||||| | |||| Sbjct 5259 TATTGATTATTTCAAAGCCCACTTTTCCACCAAAGGTGCTAGGCTTCCAGTACTCAGGGG 5200 Query 9000 AGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGC 9059 ||||||| | || |||| || ||||||| || ||||| || || | ||| | || Sbjct 5199 AGCAGATAGCATTTCCCATCAGTCCTTTCAGAGAGAACGGTGCTCCAATCTCCACCATTG 5140 Query 9060 TCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGA 9119 | ||||| ||||| ||||| || || || ||||| || | | ||| | ||| || || | Sbjct 5139 TTTCACCAAAGATTGCACCTGGTCGTGGCTTTTCTACAAGAAGGCCTGGGTACAGCTCCA 5080 Query 9120 CAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 ||| || | ||||||||| || |||||| || || || || || || || ||| Sbjct 5079 TAGCATCAATGTCGCCATAAAGCTCTTCCAGTTCAGCTGCCATTTCTTTTTCTCCT 5024 Score = 89.7 bits (98), Expect = 7e-13 Identities = 94/124 (76%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 10840 CTTACGGGTCGAACAGTGCCGATCATAAAACCCCGTCCGCGTACAATCGCACCAATAACG 10899 |||||| || | ||||| ||||| | || ||||||||||| ||||| ||| | Sbjct 553 CTTACGTGTTGTACAGTTTTCTCCATAATATCCTGTCCGCGTACAGTCGCATTCATACTG 494 Query 10900 ATCAAACCCCACCGTCATGCATACCCCTCGATTCTGGCACGGGTGCGAACAGCAAGGGTT 10959 |||||| || ||||||||||| |||| ||||| || |||| |||||||||||||| Sbjct 493 ATCAAATCCTGTTGTCATGCATACTCCTCTGTTCTGACAGGGGTTTGAACAGCAAGGGTT 434 Query 10960 GGCT 10963 |||| Sbjct 433 GGCT 430 Score = 84.2 bits (92), Expect = 3e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 10389 ACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTATA 10448 |||||| || || | || || ||||||||| | || || || || |||| ||||| Sbjct 1418 ACCTTTAACACCCATCGGTGTTGGGCAGTCAAGTCCTACTGGTGGAAGGCTTCTTGTATA 1359 Query 10449 ATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATAATCTAAGTTGTAGAGCGG 10508 |||||| ||||| ||| | ||||||||||| ||||| | |||||| ||||| || Sbjct 1358 ATAGGAAAGATTGGAATAAGCTTCCCAGCTTTTGTAACTATAATCACTATTGTAAGTTGG 1299 Query 10509 GGGACTGTCAATCA 10522 || |||||||||| Sbjct 1298 TGGGCTGTCAATCA 1285 >seq9433 Length=18633 Score = 109 bits (120), Expect = 8e-19 Identities = 188/272 (69%), Gaps = 2/272 (1%) Strand=Plus/Minus Query 8902 CTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGGTTTTCACGATGTCTAAACCTAC 8961 |||||||||| || | ||| || | | ||| || || || ||||| || || Sbjct 3874 CTTCACATTGAGGCACACGAGCTTCTCGAGCGATGCTGTCTTAACTATGTCAAAGCCAGT 3815 Query 8962 GTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACGTTCGCCATGAG 9021 || || ||||| || ||||||||||||||| | |||||||||||| ||| | | || Sbjct 3814 TTCTCCACCGAATGTACTGGGTTTCCAGTACTCTGGGGAGCAGATGGGGTTTCCAAGAAG 3755 Query 9022 CCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAGATGGCACCGGG 9081 ||| |||| |||||||||||| || | ||| | ||||| || || || || || ||| Sbjct 3754 CCCCTTCAGGGAAAACGGAGCTCCGATCTCCACCATGCTTTCCCCAAAAATACCATTGGG 3695 Query 9082 ACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACGTCGCCATAGAG 9141 | ||||| || | | ||||| | || | || | ||| || | ||| ||||| | Sbjct 3694 TTGGGGTTTCTCAAGCAGCAAGCCCGGATAAAACTCCAGAGCATCAATGTCTCCATACAA 3635 Query 9142 GGCTTCCAACTCGGCAGC--TATCTCCTTCTC 9171 |||||| ||| || || | ||| |||||| Sbjct 3634 CTCTTCCAGCTCTGCCGCCTTCTCTTCTTCTC 3603 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723267482827000