Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haliaeetus_20albicilla_20[refseq_20GCF_5F000691405.1_202014-05-15] 50,905 sequences; 1,133,549,865 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq15324 111 1e-18 seq30332 96.9 2e-14 seq31592 86.0 4e-11 >seq15324 Length=2797 Score = 111 bits (122), Expect = 1e-18 Identities = 250/371 (67%), Gaps = 6/371 (2%) Strand=Plus/Plus Query 475799 GATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTATTTTATCAGGTCAATCAGAC 475858 ||||| |||||||||||||| |||||||||||||| ||||| || ||| | | Sbjct 1659 GATGAGGCTGTTGCATATGGTGCTGCTGTCCAAGCTGCTATCTTGAGTGGTGAGGGTAAT 1718 Query 475859 GAGAAACTAAATAA--TATTGTACTTGTTGACGTAACTCCACTTTCATTAGGTCTTGAAA 475916 ||||| | | | ||||| |||| || || ||||| ||||| | |||||||| | Sbjct 1719 GAGAAGGTTCAGGATCTATTGCTCTTG--GATGTTACTCCCCTTTCCCTTGGTCTTGAGA 1776 Query 475917 CAGTTGGAGGGATTATGACTAATCTT-ATTGACAGAAATACTCCTATCCCATGCAAAAAA 475975 | | |||||| | |||||| |||| || || || || | ||||| ||| || Sbjct 1777 CTGCTGGAGGTGTCATGACT-GTCTTGATCCCAAGGAACACCACCATCCCCACCAAGAAG 1835 Query 475976 TCAAAAGTATTTTCCACTTATTCTGATAATCAAACAACTGTAACCATCCAAATCTTTGAA 476035 |||| || || || || ||||| || ||| | ||| |||||| | | || Sbjct 1836 GAGCAAGTCTTCTCTACATACTCTGACAACCAACCCGGTGTGTTGATCCAAGTGTACGAG 1895 Query 476036 GGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGGTATT 476095 ||||| |||| || | ||||| ||| | || | ||| | ||| ||| || Sbjct 1896 GGTGAGAGAACCAGGACCAGGGATAACAACTTGTTGGGTAAATTTGAGCTTTCAGGAATC 1955 Query 476096 CCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAATGGT 476155 || |||||||||||||| ||||| || || ||| || || |||||||| |||||| Sbjct 1956 CCACCTGCTCCCAGAGGTGTTCCCCAGATCACAGTCTGCTTCGACATTGATGCCAATGGT 2015 Query 476156 ATTCTTAATGT 476166 || | ||||| Sbjct 2016 ATCTTGAATGT 2026 >seq30332 Length=11874 Score = 96.9 bits (106), Expect = 2e-14 Identities = 71/83 (86%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 476090 GGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCA 476149 |||||||| |||||||||||||| || ||||| |||||||| || |||||||||||||| Sbjct 9020 GGTATTCCCCCTGCTCCCAGAGGTGTACCTCAGATTGAAGTAACCTTTGATATTGATGCC 8961 Query 476150 AATGGTATTCTTAATGTTACTGC 476172 ||||| || || ||||| |||| Sbjct 8960 AATGGCATCCTGAATGTGTCTGC 8938 Score = 91.5 bits (100), Expect = 1e-12 Identities = 220/328 (67%), Gaps = 4/328 (1%) Strand=Plus/Minus Query 475496 ACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCAAACTACTGTTGAAGTT 475555 || || || || ||||| ||||| |||| |||||| || || | | | | ||| || Sbjct 10279 ACCGCATGCGAGCGTGCAAAGCGTACTCTGTCTTCTAGCACGCAGGCCAGTATCGAAATT 10220 Query 475556 GATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAGGGCTAAATTTGAAGAT 475615 |||||||| | ||| || ||||| | | || ||||| || ||| |||||||| Sbjct 10219 GATTCTCTCTATGAGGGTATTGACTTCTACACATCCATTACCAGAGCTCGCTTTGAAGAG 10160 Query 475616 ATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTTCTCAGAGATTCT 475675 | | |||| || || | || | || || || ||| | | || | ||| | Sbjct 10159 CTGAATGCTGACCTGTTCCGTGGCACTCTGGATCCTGTGGAAAAGGCCCTGCGGGATGCC 10100 Query 475676 AAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTCAACAAGAATTCCA 475735 ||||| |||||||| || ||||||| || || || || || || || || | || ||| Sbjct 10099 AAACTCGACAAATCGCAGATCCATGACATCGTGCTGGTTGGTGGGTCTACTCGTATCCCA 10040 Query 475736 AAAATAAGAGAAA-TGCTTTCATCATATTTT-AATGGTAAAAAGTTAAATGAAAGTGTAA 475793 || || ||||| |||| || | | || ||||| ||| || | || | || | | Sbjct 10039 AAGATTC-AGAAACTGCTG-CAGGACTTCTTCAATGGCAAAGAGCTGAACAAGAGCATCA 9982 Query 475794 ATCCTGATGAAGCTGTTGCATATGGAGC 475821 |||||||||||||||| || ||||| || Sbjct 9981 ATCCTGATGAAGCTGTGGCTTATGGTGC 9954 >seq31592 Length=26080 Score = 86.0 bits (94), Expect = 4e-11 Identities = 87/111 (78%), Gaps = 2/111 (2%) Strand=Plus/Minus Query 474778 TCAAGCAACTAAAGATGC-GGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATG 474836 ||| || || |||||||| ||| ||| |||| || | |||||||| | | ||||||| Sbjct 20967 TCAGGCTACGAAAGATGCTGGGCAGA-TTGCTGGCTTGAATGTTTTGAGGGTGATTAATG 20909 Query 474837 AACCAACAGCAGCCGCACTTGCTTATGGTCTTGATAAGAATTCTGACAAAG 474887 ||||||||||||| |||||||| |||||||| || ||| | ||||||| Sbjct 20908 AACCAACAGCAGCTGCACTTGCCTATGGTCTGGACAAGTCTGAAGACAAAG 20858 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3265995637558940