Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haliaeetus_20albicilla_20[refseq_20GCF_5F000691405.1_202014-05-15] 50,905 sequences; 1,133,549,865 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq1439 122 8e-23 seq39853 100 3e-16 >seq1439 Length=3833 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || ||||| || || || || || || || || ||| Sbjct 78 ATGCAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACTCTTGAGGTTGAGCCCAGT 137 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | ||||| |||||||| ||||| ||||| || || |||||||| Sbjct 138 GACACCATCGAGAATGTAAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCCGATCAG 197 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | ||||||| || || || |||||||| ||| | | | | |||| || || ||| Sbjct 198 CAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAAC 257 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || |||||||| || || || | ||| |||| ||| | || || Sbjct 258 ATCCAGAAGGAATCCACCCTGCATCTTGTGCTGCGCTTGAGGGGTGG 304 >seq39853 Length=31101 Score = 100 bits (110), Expect = 3e-16 Identities = 88/110 (80%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 139123 TATTCGACAATTTCGGCACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGATTG 139182 || || || ||||| | ||||| ||| || |||||||| || ||||| || | |||||| Sbjct 9962 TACTCCACTATTTCTGTACACAGATTGCTGCACTTGATGGTCCCTAAGTTCCGCTGATTG 9903 Query 139183 CTTTTTCGGTTACAAGCATCTTTGTAAAGCATATACGGTGTGCCAGTTTC 139232 || || ||||| |||| |||||||| ||||| |||||||||||||| || Sbjct 9902 CTCTTCCGGTTGCAAGAGTCTTTGTACAGCATGTACGGTGTGCCAGTCTC 9853 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449611324533400