Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haliaeetus_20albicilla_20[refseq_20GCF_5F000691405.1_202014-05-15] 50,905 sequences; 1,133,549,865 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq12621 129 7e-25 >seq12621 Length=13796 Score = 129 bits (142), Expect = 7e-25 Identities = 528/825 (64%), Gaps = 22/825 (3%) Strand=Plus/Minus Query 162181 CCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCATCG 162240 || || || || || || || ||||| | || ||||| || || || | || || | | Sbjct 5682 CCAAAAACACAGACAGAGCGAACGTGAATTCCACTGCATGGTGGGTAGGGTGCACCTTTG 5623 Query 162241 TCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGGAG 162300 ||| || || || |||| |||||||| || ||||| | | || | |||||| || Sbjct 5622 GACACGTCACCTTCAAAGTACTGCCACTTGACAAACCTCGCCAGTGCATTCATGTCAGAA 5563 Query 162301 GTGTCGTACTTGTACACT-GACGGCACGGCTCCAGGAACACCCGGCAGTCTCTGTAGAGT 162359 |||||||||| |||| || | || || || || || | || | |||||| | || Sbjct 5562 ACATCGTACTTGT-CACTAGAAGAAACTGCACCTGGGACTTCAGGTATTCTCTGAATTGT 5504 Query 162360 AGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTGAC 162419 |||||||||| || ||||| || || || || || | |||||| ||||||| | | Sbjct 5503 TGCCCACAGGTACTCATCTGGGCTGTAAGTGTCTTTTGCCCACTCAATGAACT---TAAG 5447 Query 162420 CGTTTTATCG---TATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCT 162476 ||||| | | ||| | ||| || | ||| | || | ||| || || || Sbjct 5446 TATTTTACTGCTTTCTAGTACGTATTCTACAAATCTTCTGCTAACTACAAAATAGGCACT 5387 Query 162477 ACCAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTAC 162536 ||||||||| | || | | | ||| || | | ||||||| || ||||| || Sbjct 5386 ACCAGAAAAAATTGGAGTACTGAGAGGTGGTAGTTGTTTGTCTATGCCTGTGTTCTTTAT 5327 Query 162537 CATTCCCTCTACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTAGACGGG-- 162594 | || || | | | | || || ||||||| | ||| || || || Sbjct 5326 TTTACCATCAATAATCTCATGGTGTTTTTTCCACCTTACTTCTTTA----TAAACAGGCA 5271 Query 162595 --TGTTCGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTA 162652 | ||| || || | ||||| ||| | || || | | || || || Sbjct 5270 TTTTTTCTGTTTCCAAGCTGTTTTCACCTTTAAGAGCTTTTAATTTCTCTACTATTTCCT 5211 Query 162653 GATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGC 162712 | |||||||| | |||||||| ||| ||||| || || | |||||||| || | Sbjct 5210 GGTTGGTCTTTATAGGAAAGTCAAGGCCACAGAGGTTTATTAGGTATTTCCAGTTTGAAC 5151 Query 162713 TGAGTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGT 162772 | || || ||||| | | ||||| | || ||||| || | |||||| || || | Sbjct 5150 TTCTTCTGTGGAGATCTTTCATGCAGTTAATGTCTGCCTGCACCCTACTCCATGAAGCAT 5091 Query 162773 ACACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCA 162832 | || || ||||| ||| ||| | ||||||||| || ||||| || ||||| ||| Sbjct 5090 ATACAACACTCTCTAACTGGCTGGAAATAAAGACATTATCAAAACATGAGACTATTCCCT 5031 Query 162833 TCACGGCCAGTGAGAACA---TCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGAT 162889 |||| || || | || | || || ||| | || || || | ||||| | || Sbjct 5030 TCACAGC-AGCAAAAAAAGATTCTGGAGACTTTT--TGTCAACATGAATACAGTAAAAAT 4974 Query 162890 TCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCA 162949 |||||||||| ||||| | || || | ||| || | |||||| || || || | |||| Sbjct 4973 TCTGAGGGGCATAGATTGATCTTAGAAGTCTATCAAGCATCTCAATTTTGTGATAAACCA 4914 Query 162950 CGATAGAATACGCTATGGGGAACTCAGCCTCCTCGCGACTGAGAG 162994 | || || || || || || || || || || || ||||||| Sbjct 4913 CTATTGAGTAAGCAATTGGAAATTCTGCTTCTTCATTGCTGAGAG 4869 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578063936488000