Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haliaeetus_20albicilla_20[refseq_20GCF_5F000691405.1_202014-05-15] 50,905 sequences; 1,133,549,865 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq43919 86.0 7e-12 seq13678 82.4 8e-11 seq75 82.4 8e-11 >seq43919 Length=14035 Score = 86.0 bits (94), Expect = 7e-12 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 74772 TCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTC 74831 ||||||||||| || | |||||| || || | || |||||||| || || | ||||||| Sbjct 8021 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCTTC 8080 Query 74832 AACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGAC 74878 | |||||| || ||| |||||||| |||||||||||||| || Sbjct 8081 AGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAAC 8127 >seq13678 Length=21447 Score = 82.4 bits (90), Expect = 8e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 || ||||||||||| | |||||| | || || ||||| ||||| || |||||||| Sbjct 12210 GTAAAGATGTATCGAGGGCTGGCAGAGTCTTTCCCACCATGCAGCCTTGTGCCAAACTGA 12269 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| |||| || | |||||||||||| |||||| || |||||||| || || | | Sbjct 12270 CCAATAGGCTGTAGCAAGTTGAGGTTGTTACTGCCCACAAAGTTCTGAGCTAAGTTAATA 12329 Query 152149 ATCGT 152153 || || Sbjct 12330 ATAGT 12334 >seq75 Length=28767 Score = 82.4 bits (90), Expect = 8e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 |||||||| || |||| ||| ||||||||||| |||||| ||| | ||||| || || Sbjct 6232 GTGAAAATATAGCGAGGGCTGGCAGCATCCTTTCCACCATGAAGCCTGGTACCAAACTGA 6173 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| | || | | || || | ||||| || |||||||| |||||||||||||| Sbjct 6172 CCAATAGGTTGTAGCAGATTAACATTGTTACTTCCAACAAAGTTCTGAGCCAAGTTGACT 6113 Query 117425 ATCGT 117429 || || Sbjct 6112 ATAGT 6108 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546867799619000