Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haliaeetus_20albicilla_20[refseq_20GCF_5F000691405.1_202014-05-15] 50,905 sequences; 1,133,549,865 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq41731 116 5e-21 seq39853 105 9e-18 seq43919 89.7 7e-13 >seq41731 Length=36803 Score = 116 bits (128), Expect = 5e-21 Identities = 97/119 (82%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 ||||||||||| || | |||||||||||| ||||| || ||||||| ||| | ||| || Sbjct 33848 TCATCTCTACTGATGAGTTCGTTAGAAAAAGTGAGTCCAGGCATTAATCCCCTTTTCTTC 33907 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGC 48283 |||||||| |||| || ||||| ||||||||||| || ||||| || || ||||| || Sbjct 33908 AGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAGC 33966 Score = 95.1 bits (104), Expect = 2e-14 Identities = 87/110 (79%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 47835 GACATAACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCT 47894 ||||| ||||||||| | ||||||||||| || || ||||| || ||||| || |||||| Sbjct 32581 GACATGACTCCCATTCTCTGATATTCACCTACTCGCTTCTCAAAGAAATTGGTCTTGCCT 32640 Query 47895 TCCAATGATATATTTTCCATAAAATCAAATGGATTAACTGCATTATAAAT 47944 || | || || |||||||| || ||||| ||||| |||| || || || Sbjct 32641 TCTAGAGAGATGTTTTCCATGAAGTCAAAAGGATTCTCTGCTTTGTATAT 32690 Score = 95.1 bits (104), Expect = 2e-14 Identities = 84/105 (80%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 48401 ATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGC 48460 |||||||| ||| || || || | |||||| |||||||| || || |||||||| || || Sbjct 35976 ATCTTTAATGTAGGTGTCAATAAGAAGACTGTACATTTCTGAATGTATATTTTCCATGGC 36035 Query 48461 CATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTC 48505 |||||||| || || ||||| | ||||||||||| ||||| || Sbjct 36036 AATCTGAAAGCCATAGAAACAGCGAGCTTCTGTGATTTGTACTTC 36080 >seq39853 Length=31101 Score = 105 bits (116), Expect = 9e-18 Identities = 102/131 (78%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 || |||||||| ||||| || || || ||||| |||||||| ||||||| || |||||| Sbjct 6417 GTGCCTGCATTGAATAACGTGGGGGAGGCATGGGTAAACCACCTTTCAGACAGAAGATTG 6358 Query 78459 TATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAAC 78518 || |||||||| || | || ||||| || || || || |||| ||| | ||||||| Sbjct 6357 TAAGTTTCAATTGCAGCATCAATGTCATTTTTGTGGATCCCCACCGATACCCTCATCAAC 6298 Query 78519 ATATGCTGAGG 78529 ||||| ||||| Sbjct 6297 ATATGTTGAGG 6287 Score = 102 bits (112), Expect = 1e-16 Identities = 85/104 (82%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186 ||||| ||||| || | ||||| || ||||| || |||||||| || || || | |||| Sbjct 13856 TGAAACTCTCCTGAGAGGACTCTGCGTGTGTAGATGTTACTGGTGTAGGGCTCAATAGAT 13797 Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGG 77230 ||||| || ||||| || ||||||||||||||||||||||| || Sbjct 13796 TCATTATTGCCCAAGATCTGAGCAGTAGAAGCAGTTGGCATGGG 13753 Score = 87.8 bits (96), Expect = 2e-12 Identities = 122/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 76849 TCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATAT 76908 |||| || ||||| |||||||| || |||||| ||| | || || || || || || | Sbjct 16282 TCCACCCATAGAAGTGCATGCTGGTGAGTTTGCCATAGTTGGGTTCTGCAATGTGGATGT 16223 Query 76909 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 76968 | | ||||| || ||||| |||||||||||||| || || ||||| || | | |||| Sbjct 16222 TGAGAGACTGGCTCTGATCAATGAAAGCTCCTCTGTCTGCTGCCATCTTGAGGACAGTCT 16163 Query 76969 TTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAA 77019 | || | || ||||| | || || | | ||| || | ||||| |||| Sbjct 16162 TCTGGGAGATCTCCCACACTGTCTTATAGAGTTGCTTCAAGTCATCAGGAA 16112 >seq43919 Length=14035 Score = 89.7 bits (98), Expect = 7e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 |||||||| ||||| | ||| || || || || || || ||||| || || | || || Sbjct 8021 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCTTC 8080 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGC 48283 ||||||||||| || || || || || |||||||| |||||||| || || ||||| || Sbjct 8081 AGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAAGC 8139 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694226773559200