Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haliaeetus_20albicilla_20[refseq_20GCF_5F000691405.1_202014-05-15] 50,905 sequences; 1,133,549,865 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq16959 147 3e-30 seq9433 116 5e-21 >seq16959 Length=65372 Score = 147 bits (162), Expect = 3e-30 Identities = 224/315 (71%), Gaps = 3/315 (1%) Strand=Plus/Minus Query 8289 GGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGC 8348 |||| || | || ||||| || || |||||| | |||| || ||| | | || Sbjct 5319 GGAAAGCAGTGAAAGGACAGCCTTTCACGTTGTTGCAGATGAGCTTCTGTAAGGAGGCAG 5260 Query 8349 TCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGG 8408 | |||| || | || ||||| | ||| || |||||||| |||||||||||| | |||| Sbjct 5259 TATTGATTATTTCAAAGCCCACTTTTCCACCAAAGGTGCTAGGCTTCCAGTACTCAGGGG 5200 Query 8409 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGC 8468 ||||||| | || |||| || ||||| || |||||||| || || | ||| | || Sbjct 5199 AGCAGATAGCATTTCCCATCAGTCCTTTCAGAGAGAACGGTGCTCCAATCTCCACCATTG 5140 Query 8469 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAAT-CCGGTGTACAGCTCC 8527 | ||||| ||||| || || || |||||||| || ||||| || | |||||||||| Sbjct 5139 TTTCACCAAAGATTGCACCTGGTCGTGGCTTTTCTAC-AAGAAGGCCTGGGTACAGCTCC 5081 Query 8528 ACAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTGT- 8586 | ||| || | ||| || ||||| | ||||| || || || || ||||||||||| Sbjct 5080 ATAGCATCAATGTCGCCATAAAGCTCTTCCAGTTCAGCTGCCATTTCTTTTTCTCCTGTA 5021 Query 8587 TTTATTAATAAAAAA 8601 ||||| || | ||| Sbjct 5020 ATTATTGATGAGAAA 5006 Score = 143 bits (158), Expect = 4e-29 Identities = 177/242 (73%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 9244 ATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGA 9303 ||||| | | | || |||||||| ||||| ||| ||| |||||||| || |||||||| Sbjct 3313 ATGAGCCTACTAGTTTGGAACAGCTGCTCATCATCCCACTCTGGATGCTCCTGTTTCAGG 3254 Query 9304 ACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGT 9363 | || || |||| |||||||||||| ||||| || || || |||||||| | || || Sbjct 3253 ATGTCACAGACCCGGTTGTGTTCCCTCAGCCATATTGTAGCATACATCATCAAGCCTGGG 3194 Query 9364 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGA 9423 |||| || || |||| || || |||| | ||| || ||| || || | ||||| Sbjct 3193 ACCAAACCGAACACCTCCTGCCCAACAGAAAACTGCAGGTGTTCAGGTACATGAGGAGGG 3134 Query 9424 TAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATC 9483 |||||||| | |||| ||| || || | || ||||||||||| || || |||||| Sbjct 3133 TAGATCATATCTGCCTGAGTGTCCTTCACTGTTGGTGGATACATTTCTCCATCGATCATC 3074 Query 9484 TG 9485 || Sbjct 3073 TG 3072 >seq9433 Length=18633 Score = 116 bits (128), Expect = 5e-21 Identities = 182/255 (71%), Gaps = 4/255 (2%) Strand=Plus/Minus Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291 || ||||| | |||||| |||| |||||||| || |||||||| ||||| ||||| Sbjct 1441 TCACCGATGAGGATGAGACGAGCCGTCTGGAAGAGCTGCTCGTCGCTCCAGGTGGGATGC 1382 Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351 || ||||||| | || || || | |||||| || | ||||||| ||||||||||| Sbjct 1381 TCCCGTTTCAGTATGTCACAGACGCGGTTGTGCTCGCGCAGCCAGAGCGTGGCGTACATG 1322 Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGC 9411 |||||| || | || ||||| |||| || || | ||||| || | | | ||| Sbjct 1321 CAGAGCCCCGGCAGAAGCCCAAACACCTCCTGGCCCATCGCCAGCTGCTTCTCCTTGGGG 1262 Query 9412 ACTTCGGGA-GGATAGATCATGTGCACCTGGA-CGTCTTTGACCGAGGGGGGATACATTT 9469 | | | ||| || |||| |||||| | ||||| | || |||||| |||||| |||| | Sbjct 1261 A-TGCTGGACGGGTAGACCATGTG-AACTGGAGCATCGGTGACCGTGGGGGGGTACACCT 1204 Query 9470 CACCGTCAATCATCT 9484 | || || | || || Sbjct 1203 CTCCATCCACCACCT 1189 Score = 98.7 bits (108), Expect = 1e-15 Identities = 150/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 8372 TCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTCGCCATGAGG 8431 ||||| ||||| || ||||| ||||||||| | |||||||||||| ||| | | || Sbjct 3813 TCTCCACCGAATGTACTGGGTTTCCAGTACTCTGGGGAGCAGATGGGGTTTCCAAGAAGC 3754 Query 8432 CCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATGGCGTTGGGA 8491 || || ||||| |||||||| || | ||| | ||||| || || || || | ||||| Sbjct 3753 CCCTTCAGGGAAAACGGAGCTCCGATCTCCACCATGCTTTCCCCAAAAATACCATTGGGT 3694 Query 8492 CGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCTCCGTAAAGG 8551 |||| || || | || || || | || | ||||| ||| || | |||||| || | Sbjct 3693 TGGGGTTTCTCAAGCAGCAAGCCCGGATAAAACTCCAGAGCATCAATGTCTCCATACAAC 3634 Query 8552 GCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTG 8585 | || || || || |||| | |||||||| Sbjct 3633 TCTTCCAGCTCTGCCGCCTTCTCTTCTTCTCCTG 3600 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716420642331200