Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haliaeetus_20leucocephalus_20[refseq_20GCF_5F000737465.1_202014-08- 04] 1,023 sequences; 1,178,409,481 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq3 156 5e-33 seq178 118 1e-21 >seq3 Length=17578601 Score = 156 bits (172), Expect = 5e-33 Identities = 207/286 (72%), Gaps = 1/286 (0%) Strand=Plus/Plus Query 83119 GGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCA 83178 |||| |||||| | || | | |||||||||||||||||||| | |||||||||||| Sbjct 16783732 GGGCACGCCGTCGGGGCCGATGAGGAACTTCTCGAAGTTCCAGGAGATGTCGTTGCGGCA 16783791 Query 83179 CACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTAGG 83238 || || |||||| ||| ||| |||| | ||| |||| | ||||||| || Sbjct 16783792 GACGGGGGACCAGATGATGTACTGCGGGTTGGTCATCAGCGAGGAGGGGTCGTCGTGCGG 16783851 Query 83239 CGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACCTC 83298 ||||| ||||||| |||||||||||||| || || || | ||||| ||||| Sbjct 16783852 GAAGGGCAGCGCCTCTCTCAGGAAGGCGAAGAGGGGGTGCGCGTTCTTCCCGTTCACCTC 16783911 Query 83299 GCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTCAG 83358 |||||||||||| || | || || |||| | | ||||| || ||||| ||||||| ||| Sbjct 16783912 GCACTTCTCGAACAGGAGGAAATTGGGCTTGTACCCGTTGCCGGGACGAACGTGCTCCAG 16783971 Query 83359 GGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTGGTGAC-CGAA 83403 || || |||||| | ||| || ||||||| | ||| |||| Sbjct 16783972 CGAGAGCGGGATCTCCTCGTTCGTAGCATTTTCCTAGGGACGCGAA 16784017 >seq178 Length=1460915 Score = 118 bits (130), Expect = 1e-21 Identities = 121/156 (78%), Gaps = 3/156 (2%) Strand=Plus/Minus Query 83388 TTTCCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTA 83447 || |||||| || || ||||| || ||||| || ||||| ||||||| ||| | || Sbjct 539932 TTACCTGGTAGCCAAATTGGTTGCAGGGGAAACCCAGCACGACCAGCCGCCGGGGG--TA 539875 Query 83448 GGCGCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACG 83507 | | | ||||||| ||| | ||| ||||| ||||| |||||| | ||||||||||||| Sbjct 539874 GCGGGCT-TGCAGCTGGTTGAGCTGGGTGTAGTCCCGCACCGTGGTGCCTCAGAGGGACG 539816 Query 83508 CTACGTTCTCGATGAGCAAGACCCGGCCCCGTAAGA 83543 | |||||||||||||| | || |||||||| |||| Sbjct 539815 CCACGTTCTCGATGAGGACCACGCGGCCCCGGAAGA 539780 Score = 113 bits (124), Expect = 5e-20 Identities = 220/312 (71%), Gaps = 16/312 (5%) Strand=Plus/Minus Query 83056 GAGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGG-CA-GCGGTGGCTGTACCTG 83113 ||| ||| || |||||||||||||| || || ||| || |||| ||||||| | Sbjct 540356 GAGGAGGCGCTGGATGTCGGGCTCCA--GCTGGGCGGTGGGCATGCGGGGGCTGTAGCGC 540299 Query 83114 CGCACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTG 83173 || | || || || | |||||||| ||||||||| |||||||||| | |||| | Sbjct 540298 CGGAAAGGTTCCCCCTCGGGACCCACCAGGAACTTCTCAAAGTTCCAGGAGATGTCGGAG 540239 Query 83174 CGGCACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGC-GTGCTCATGTCGTC 83232 || |||||| ||||| | || | || ||| ||| || |||| | ||||| Sbjct 540238 CGCTGCACTGGGCTCCAGGTGAGGAAGCGAGGTTCGGTCATCAGGTGTGC-CGCCTCGTC 540180 Query 83233 GCTAGGCGCCGGCAGG---GCCTCTCGTAGGAAGGCGAAGAGCGGATG--TGCCCTTGCA 83287 | || || |||||| |||| || ||| ||||||||| || || || ||| || Sbjct 540179 GGCCGGTGCAGGCAGGTGAGCCT-TC--AGGTAGGCGAAGACGGGGTGGGTGTCCT-GC- 540125 Query 83288 CCGTTGACCTCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGG 83347 || || |||| |||||||| |||||| | ||||| ||||||||||| ||| || || Sbjct 540124 CCATTCACCTGGCACTTCTGGAAGAGGGTGAAGTTGGGCTCGAAGCCACCCCCTGGCCGC 540065 Query 83348 ACGTGCTTCAGG 83359 || ||||||||| Sbjct 540064 ACATGCTTCAGG 540053 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608789015010920