Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Haliaeetus_20leucocephalus_20[refseq_20GCF_5F000737465.1_202014-08-
04] 1,023 sequences; 1,178,409,481 total letters
Query= NC_002169.1
Length=135611
Score E
Sequences producing significant alignments: (Bits) Value
seq841 113 4e-20
seq396 102 7e-17
>seq841
Length=5312791
Score = 113 bits (124), Expect = 4e-20
Identities = 143/197 (73%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601
|| || || || || |||||||| || || |||||| ||| || ||||| || |||
Sbjct 4754239 GTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGCTTGCCA 4754298
Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661
||| |||| || | |||||||||||| || ||||| |||||||| || || ||
Sbjct 4754299 GCGAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTT 4754358
Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721
|| | |||| |||||| || ||| ||||| | || | || ||||||||||| ||
Sbjct 4754359 ACATTCTCGATGGTGTCACTGGGCTCAACCTCAAGAGTGATGGTCTTGCCGGTCAGGGTC 4754418
Query 118722 TTTACAAAAATCTGCAT 118738
|| ||||| ||||||||
Sbjct 4754419 TTCACAAAGATCTGCAT 4754435
Score = 105 bits (116), Expect = 6e-18
Identities = 142/198 (72%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601
|| || || || || |||||||| || || |||||| ||| || ||||| || |||
Sbjct 4753393 GTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGCTTGCCA 4753452
Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661
||| |||| || | ||||||||| || || ||||| |||||||| || || ||
Sbjct 4753453 GCGAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTG 4753512
Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721
|| | || | |||||| || ||| || || | ||| | || ||||||||||| ||
Sbjct 4753513 ACATTCTCAATGGTGTCACTGGGCTCAACTTCTAGGGTGATGGTCTTGCCGGTCAGGGTC 4753572
Query 118722 TTTACAAAAATCTGCATG 118739
|| ||||| |||||||||
Sbjct 4753573 TTCACAAAGATCTGCATG 4753590
>seq396
Length=9930490
Score = 102 bits (112), Expect = 7e-17
Identities = 148/208 (71%), Gaps = 1/208 (0%)
Strand=Plus/Minus
Query 118532 CAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGA 118590
|||| |||| || || || || || |||||||| || || ||||| || || |
Sbjct 5100944 CAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAAGGTGCGTCCGTCTTCCA 5100885
Query 118591 GCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAA 118650
|||| || ||||| |||| || | |||||||||||| || ||||| |||||||| |
Sbjct 5100884 GCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTGGA 5100825
Query 118651 TTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGC 118710
| || || || | || | |||||| || ||| ||||| | ||| | || ||||
Sbjct 5100824 TCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTGC 5100765
Query 118711 CGGTCAGAGTTTTTACAAAAATCTGCAT 118738
| ||||| || || ||||||||||||||
Sbjct 5100764 CAGTCAGGGTCTTCACAAAAATCTGCAT 5100737
Score = 100 bits (110), Expect = 2e-16
Identities = 150/212 (71%), Gaps = 1/212 (0%)
Strand=Plus/Minus
Query 118532 CAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGA 118590
|||| |||| || || || || || |||||||| || || ||||| || || |
Sbjct 5101172 CAAGATGGAGAGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCGTCTTCCA 5101113
Query 118591 GCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAA 118650
|||| || ||||| |||| || | |||||||||||| || ||||| |||||||| |
Sbjct 5101112 GCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTGGA 5101053
Query 118651 TTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGC 118710
| || || || | || | |||||| || ||| ||||| | ||| | || ||||
Sbjct 5101052 TCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTGC 5100993
Query 118711 CGGTCAGAGTTTTTACAAAAATCTGCATGGCT 118742
| ||||| || || ||||| ||||||||| ||
Sbjct 5100992 CAGTCAGGGTCTTCACAAAGATCTGCATGCCT 5100961
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433824991083916
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |