Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haliaeetus_20leucocephalus_20[refseq_20GCF_5F000737465.1_202014-08- 04] 1,023 sequences; 1,178,409,481 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq841 113 4e-20 seq396 102 7e-17 >seq841 Length=5312791 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || || || || || |||||||| || || |||||| ||| || ||||| || ||| Sbjct 4754239 GTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGCTTGCCA 4754298 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| |||| || | |||||||||||| || ||||| |||||||| || || || Sbjct 4754299 GCGAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTT 4754358 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | |||| |||||| || ||| ||||| | || | || ||||||||||| || Sbjct 4754359 ACATTCTCGATGGTGTCACTGGGCTCAACCTCAAGAGTGATGGTCTTGCCGGTCAGGGTC 4754418 Query 118722 TTTACAAAAATCTGCAT 118738 || ||||| |||||||| Sbjct 4754419 TTCACAAAGATCTGCAT 4754435 Score = 105 bits (116), Expect = 6e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || || || || || |||||||| || || |||||| ||| || ||||| || ||| Sbjct 4753393 GTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGCTTGCCA 4753452 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| |||| || | ||||||||| || || ||||| |||||||| || || || Sbjct 4753453 GCGAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTG 4753512 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | || | |||||| || ||| || || | ||| | || ||||||||||| || Sbjct 4753513 ACATTCTCAATGGTGTCACTGGGCTCAACTTCTAGGGTGATGGTCTTGCCGGTCAGGGTC 4753572 Query 118722 TTTACAAAAATCTGCATG 118739 || ||||| ||||||||| Sbjct 4753573 TTCACAAAGATCTGCATG 4753590 >seq396 Length=9930490 Score = 102 bits (112), Expect = 7e-17 Identities = 148/208 (71%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 118532 CAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGA 118590 |||| |||| || || || || || |||||||| || || ||||| || || | Sbjct 5100944 CAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAAGGTGCGTCCGTCTTCCA 5100885 Query 118591 GCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAA 118650 |||| || ||||| |||| || | |||||||||||| || ||||| |||||||| | Sbjct 5100884 GCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTGGA 5100825 Query 118651 TTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGC 118710 | || || || | || | |||||| || ||| ||||| | ||| | || |||| Sbjct 5100824 TCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTGC 5100765 Query 118711 CGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | ||||| || || |||||||||||||| Sbjct 5100764 CAGTCAGGGTCTTCACAAAAATCTGCAT 5100737 Score = 100 bits (110), Expect = 2e-16 Identities = 150/212 (71%), Gaps = 1/212 (0%) Strand=Plus/Minus Query 118532 CAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGA 118590 |||| |||| || || || || || |||||||| || || ||||| || || | Sbjct 5101172 CAAGATGGAGAGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCGTCTTCCA 5101113 Query 118591 GCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAA 118650 |||| || ||||| |||| || | |||||||||||| || ||||| |||||||| | Sbjct 5101112 GCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTGGA 5101053 Query 118651 TTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGC 118710 | || || || | || | |||||| || ||| ||||| | ||| | || |||| Sbjct 5101052 TCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTGC 5100993 Query 118711 CGGTCAGAGTTTTTACAAAAATCTGCATGGCT 118742 | ||||| || || ||||| ||||||||| || Sbjct 5100992 CAGTCAGGGTCTTCACAAAGATCTGCATGCCT 5100961 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433824991083916