Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haliaeetus_20leucocephalus_20[refseq_20GCF_5F000737465.1_202014-08- 04] 1,023 sequences; 1,178,409,481 total letters Query= NC_002229.3 Length=177874 Score E Sequences producing significant alignments: (Bits) Value seq363 89.7 6e-13 >seq363 Length=10140242 Score = 89.7 bits (98), Expect = 6e-13 Identities = 139/196 (71%), Gaps = 27/196 (14%) Strand=Plus/Plus Query 139828 CTCCCCTAGCCCGCTGAAAGTCAGCGAGT-AAACAGCGGGCG-----GAGGGAGCGCGGC 139881 ||||||| | ||||||||||||||||||| ||||||||| || | ||||||||||| Sbjct 1506232 CTCCCCTCGTCCGCTGAAAGTCAGCGAGTAAAACAGCGGACGGGCGCGGGGGAGCGCGGC 1506291 Query 139882 GACAGTACCATCAATACCTCCGATTAGGGTTAGACACAGCGGAGCCT-TCCACCCGCCAC 139940 ||| | ||||||||||| |||| | | |||| ||||||||||| Sbjct 1506292 AGCAG---------------CCATTAGGGTTAGTCACACCAGGGCCTCCCCACCCGCCAC 1506336 Query 139941 GTGTGCCGGGGGAACCCCGCGTGGGGCTCTTGTA---GCTTCCTCCGCCTACGCCCACCG 139997 | | ||||||| |||| || ||||| || | || || ||||| |||||| ||| Sbjct 1506337 GCGACCCGGGGGCGCCCC-CGCCGGGCTTTTTAAAAGCCTCCCGCCGCC-ACGCCCGCCG 1506394 Query 139998 CGCGCCTATTGGCCGG 140013 ||| | ||||| ||| Sbjct 1506395 CGCCTCCATTGGTCGG 1506410 Score = 89.7 bits (98), Expect = 6e-13 Identities = 139/196 (71%), Gaps = 27/196 (14%) Strand=Plus/Minus Query 1607 CCGGCCAATAGGCGCGCGGTGGGCGTAGGCGGAGGAAGC---TACAAGAGCCCCACGCGG 1663 ||| ||||| | |||||| |||||| ||||| || || | || ||||| || || Sbjct 1506410 CCGACCAATGGAGGCGCGGCGGGCGT-GGCGGCGGGAGGCTTTTAAAAAGCCCGGCG-GG 1506353 Query 1664 GGTTCCCCCGGCACACGTGGCGGGTGGA-AGGCTCCGCTGTGTCTAACCCTAATCGGAGG 1722 || ||||||| | |||||||||||| |||| | | |||| ||||||||||| | Sbjct 1506352 GGCGCCCCCGGGTCGCGTGGCGGGTGGGGAGGCCCTGGTGTGACTAACCCTAATGG---- 1506297 Query 1723 TATTGATGGTACTGTCGCCGCGCTCCCTC-----CGCCCGCTGTTT-ACTCGCTGACTTT 1776 ||| ||||||||||| | || ||||||||| ||||||||||||| Sbjct 1506296 -----------CTGCTGCCGCGCTCCCCCGCGCCCGTCCGCTGTTTTACTCGCTGACTTT 1506248 Query 1777 CAGCGGGCTAGGGGAG 1792 |||||| | ||||||| Sbjct 1506247 CAGCGGACGAGGGGAG 1506232 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 569061523032720