Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haliaeetus_20leucocephalus_20[refseq_20GCF_5F000737465.1_202014-08- 04] 1,023 sequences; 1,178,409,481 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq340 390 8e-104 >seq340 Length=24413552 Score = 390 bits (432), Expect = 8e-104 Identities = 694/1002 (69%), Gaps = 14/1002 (1%) Strand=Plus/Minus Query 107628 TACCTCAACATAACCAGAGACTGTGAGCG-CTTCAAGG---CCCAAAGGAAGTTCATACA 107683 ||||| ||||| || | ||||| ||| |||||||| ||| || ||||| | Sbjct 5936862 TACCTGAACATGACTAAGGACTGC-AGCAACTTCAAGGAGACCC---GGCGATTCATCGA 5936807 Query 107684 GTTCCCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGA 107743 |||||| ||||| | || ||| || |||||||| |||||||| ||||| |||| | Sbjct 5936806 GTTCCCGCTGAGCCAGGAGGAGGCGGAGTTCCCCATCGCCTACTCCATGGTCATCCACAA 5936747 Query 107744 GAAGATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTG 107803 || || || | ||||| ||||| ||||| || | || ||||| |||||| | ||||| Sbjct 5936746 CAAAATCGACATGTTTGAGCGGCTCCTGCGCTCCCTCTACGCCCCCCAGAACGTCTACTG 5936687 Query 107804 TGTCCACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTC 107863 |||||| | || |||||||| | | ||| ||||||| || |||||| | Sbjct 5936686 CGTCCACATTGACAGCAAGTCCCCGGCCGCCTTCCAAGAGGCCGTGCGGGCCATCGCAGC 5936627 Query 107864 CTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTC 107923 |||||||| ||| ||||| |||| || |||| |||||| |||||||||||||| Sbjct 5936626 CTGCTTCCGCAACGTCTTTGTGGCGAGCCGCTTGGAAGAGGTGGTGTATGCCTCCTGGTC 5936567 Query 107924 CAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCATGGAA 107983 | | |||| |||||||| ||||| ||| | ||| |||| | |||| | |||| ||| Sbjct 5936566 CCGGCTGCAGGCTGACCTCAACTGCATGCAGGACCTGCTGCGGAGCCCCATGCCGTGGCG 5936507 Query 107984 GTACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCT 108043 ||| | || || || ||||| || || |||||||| |||||||| |||||| |||| Sbjct 5936506 CTACGTCCTCAACACCTGCGGCACTGATTTCCCCATCAAGACCAACATCGAGATCGTCCG 5936447 Query 108044 GGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCCaa 108103 ||||| ||| || || |||| ||||||| |||||||| ||| | || | |||| Sbjct 5936446 TGCCCTGAAGGTGCTGCAGGGGCAGAACAGCATGGAGTCGGAGAAGGCCTCGGGCCCCAA 5936387 Query 108104 aaaaaaTCGCTGGAAATACCGCTATGAGGTGACAGACACACTGTACCCTACCAGCAAGA- 108162 | | |||||| |||| | | || ||| | | | || | |||| | | Sbjct 5936386 GCAGGAGCGCTGGCGGTACCACCACGAAGTGGGGAAGTTCATCTTCCGGA-CAGCCACAG 5936328 Query 108163 TGAAGGACCCTCCCCCTGATAATTTACCCATGTTCACAGGGAATGCCTATTTTGTGGCCT 108222 ||| || || || | || | ||||||||||| || || || || |||||| | Sbjct 5936327 AGAAACCGCCGCCACCGCACAACTATCCCATGTTCACGGGCAACGCGTACATTGTGGTCA 5936268 Query 108223 CTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCCAAAGACTGGTTGAATGGG 108282 | || ||||| || || | |||| || ||||| | | || | | || |||| Sbjct 5936267 CACGGGCCTTCGTGCAGTACATCTTTGAGAACCCCACGGCGCAGCAGTTCCTCGAGTGGG 5936208 Query 108283 TCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCT--TCAGCGTGCTCCGTG 108340 ||| |||||||| ||||||||||||||| ||||||||||||| | || ||| ||| | Sbjct 5936207 CCAAGGACACCTACAGCCCCGACGAACACGTCTGGGCCACCCTCAACCGCATGC-CCG-G 5936150 Query 108341 GATGCCTGGCTCTGTTCCTAGCCACCCCAAGTATCACATCTCAGACATGACTGCCATCGC 108400 |||| ||| | | || | ||||| || |||| ||||||| ||| | | Sbjct 5936149 CGTGCCGGGCGCCATGCCCCAGAATGACAAGTTCCAGCTCTCGGACATGAACGCCCTGCC 5936090 Query 108401 CAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCTTATGCACC 108460 | | || |||||||||||||||| ||||| || ||||| ||| ||||| || | || Sbjct 5936089 CCGCCTGGTCAAGTGGCAGTACCTGGAGGGCGACACCAGCAAGGGCGCGCCCTACCCGCC 5936030 Query 108461 CTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTACTGGAT 108520 |||| | || || | | | ||| ||||||| |||||||| || ||| || |||| | Sbjct 5936029 CTGCGCCGGCCAGCACCAGCGCGCCGTCTGCATCTACGGGGCGGGCGACGTGCCCTGGCT 5935970 Query 108521 TCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGACCCGAGGGTGGATGATAACGTCCT 108580 |||||| | || ||||||||||| |||||||| ||||| ||||| | || | | Sbjct 5935969 GCTCCAGCAGCACCACCTCTTGGCCAACAAGTTCGACCCCCTCGTGGACAACGCCGCCAT 5935910 Query 108581 GCAGTGCTTAGAAGAGTACCTACGTCATAAGGCCATCTATGG 108622 ||||| | || ||| |||| || || |||||| |||| || Sbjct 5935909 CCAGTGTCTCGAGGAGCACCTGCGCCACAAGGCCCTCTACGG 5935868 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348264457849902