Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haliaeetus_20leucocephalus_20[refseq_20GCF_5F000737465.1_202014-08- 04] 1,023 sequences; 1,178,409,481 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq537 120 3e-22 seq396 105 6e-18 seq841 100 3e-16 >seq537 Length=7949590 Score = 120 bits (132), Expect = 3e-22 Identities = 116/149 (78%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 23048 ACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTG 23107 ||||| |||||| || ||||| || ||||| ||||| |||||||| ||||| || || Sbjct 7423629 ACCTCATCTTTGCTGGTATACTCCACTATTTCTGTACACAGATTGCTGCACTTGATGGTC 7423570 Query 23108 CCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTG 23167 || || || | ||| ||||| || || |||||||| || ||||| ||||||||||| ||| Sbjct 7423569 CCTAAGTTCCGCTGATTGCTCTTCCGGTTGCACGAGTCTTTGTACAGCATGTACGGTGTG 7423510 Query 23168 CCCGTCTCGACCTGCGACTCGATGATCGC 23196 || ||||| ||| || || ||||| || Sbjct 7423509 CCAGTCTCTGTCTGGGATTCAATGATAGC 7423481 >seq396 Length=9930490 Score = 105 bits (116), Expect = 6e-18 Identities = 164/233 (70%), Gaps = 1/233 (0%) Strand=Plus/Plus Query 31187 TCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAA 31246 ||||| ||||| ||||| || ||||| ||||| ||||| || |||||| | || ||||| Sbjct 5100732 TCAAA-ATGCAGATTTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAG 5100790 Query 31247 CCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCC 31306 || |||| | || | || || | || ||||||||||||| | || ||| Sbjct 5100791 CCCAGTGACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCC 5100850 Query 31307 GACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGAT 31366 || |||||| | || || || |||||||| ||| |||||||| || || || Sbjct 5100851 GATCAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGACGGACGCACCTTGTCTGAC 5100910 Query 31367 TATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 || ||||| || || ||||| || || ||||| || || | |||||||| || Sbjct 5100911 TACAACATCCAGAAGGAATCCACCCTCCATCTTGTGCTGCGCCTGAGGGGAGG 5100963 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || || || ||||| ||||| ||||| || |||||| | || ||||| || Sbjct 5100964 CATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCCAG 5101023 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | || || | || ||||||||||||| | || ||||| || Sbjct 5101024 TGACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCCGATCA 5101083 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | || || || |||||||| ||| |||||||| || || || || || Sbjct 5101084 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGACGGACGCACCCTGTCTGACTACAA 5101143 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||| || || ||||| ||||| ||||| || || | |||||||| || Sbjct 5101144 CATCCAGAAGGAATCCACTCTCCATCTTGTGCTGCGCCTGAGGGGTGG 5101191 >seq841 Length=5312791 Score = 100 bits (110), Expect = 3e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || || || ||||| ||||| ||||| || |||||| | || ||||| || Sbjct 4753590 CATGCAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACCCTAGAAGTTGAGCCCAG 4753531 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | ||||| | || ||||||||||||| | || || || || Sbjct 4753530 TGACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGATCA 4753471 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | || || ||||||||||| ||| ||||||| || || || || || Sbjct 4753470 GCAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAA 4753411 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||| || || ||||| || || ||||| || || | ||||||| |||| Sbjct 4753410 CATCCAGAAGGAATCCACCCTGCATCTTGTGCTGCGCTTGAGGGGTGGTA 4753361 Score = 100 bits (110), Expect = 3e-16 Identities = 162/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 ||| ||||| || || || ||||| ||||| ||||| || ||||| | || ||||| || Sbjct 4754439 AAAAATGCAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACTCTTGAGGTTGAGCC 4754380 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 |||| |||| | || || | || ||||||||||||| | || ||||| Sbjct 4754379 CAGTGACACCATCGAGAATGTAAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCCGA 4754320 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTA 31368 |||||| | || || ||||||||||| ||| ||||||| || || || || Sbjct 4754319 TCAGCAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTA 4754260 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||| || || ||||| || || ||||| || || | ||||||| |||| Sbjct 4754259 CAACATCCAGAAGGAATCCACCCTGCATCTTGTGCTGCGCTTGAGGGGTGGTA 4754207 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445760699762160