Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Haliaeetus_20leucocephalus_20[refseq_20GCF_5F000737465.1_202014-08-
04] 1,023 sequences; 1,178,409,481 total letters
Query= NC_003391.1
Length=205719
Score E
Sequences producing significant alignments: (Bits) Value
seq152 125 9e-24
seq556 114 2e-20
seq218 114 2e-20
seq537 84.2 3e-11
>seq152
Length=15877554
Score = 125 bits (138), Expect = 9e-24
Identities = 144/194 (74%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 9228 TATTTCTTATTAGATACTTCCAAAAGCTGTAACAGATGCAAGAACAGATTGATGATATCC 9287
||||| |||||| || |||| | | | ||| || ||||||||||||||||| |||
Sbjct 1132654 TATTTTTTATTAAATGTCTCCAGTAAACGCAGCAGGTGTAAGAACAGATTGATGATGTCC 1132713
Query 9288 AAGTAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAGTGAG 9347
||||||| |||||| | || || | ||| |||||||| || | || || || || |
Sbjct 1132714 AAGTAGAGATTGATTGCAGCCAATATATATTCTTCAGGGGATAATTTGTGCATGAGCAAA 1132773
Query 9348 TGCGTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAAAAGCAGACAGGACCAGC 9407
||||||||||| ||||| ||||| ||||| | ||| || ||| ||||| | |||| |
Sbjct 1132774 TGCGTGTCATAAATAATAAATCCACAGAACAGAAGAGCTCCAGCAGCAGCAAACACCAAC 1132833
Query 9408 TCCACTGTTTCACT 9421
|||| || |||||
Sbjct 1132834 TCCATCGTCTCACT 1132847
Score = 107 bits (118), Expect = 3e-18
Identities = 112/147 (76%), Gaps = 0/147 (0%)
Strand=Plus/Plus
Query 9456 AAAATCCACAAAGTAACAAACAATCCTGCTCCAAGTTTACTGAAATCTCTCTTTGATTGT 9515
|||||| ||| | |||| | |||||||||| ||| ||||| ||||||||||| ||
Sbjct 1133962 AAAATCATCAATATGACAACATACCCTGCTCCAAATTTGCTGAAGTCTCTCTTTGACTGC 1134021
Query 9516 AGAGTATATGCAGTCAGAGCAAGAAACACTGCAGTAGTCAGCATGAAAGCTTGCATAACG 9575
| |||||||| ||||| ||||||| || |||||||| || || || ||||||| ||
Sbjct 1134022 AAGGTATATGCCGTCAGTCCAAGAAATACAGCAGTAGTAAGAATAAAGGCTTGCAACACA 1134081
Query 9576 ACATGCACATCATAGAAAGTAACAACA 9602
| ||||||||||||| | || |||
Sbjct 1134082 ATGGACACATCATAGAAACTCACTACA 1134108
>seq556
Length=21056529
Score = 114 bits (126), Expect = 2e-20
Identities = 107/136 (79%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239
|||| ||||| ||||| | ||| ||||| || || ||||| ||||| ||||| | ||| |
Sbjct 17129626 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCT 17129567
Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299
| ||||||||||| | ||||| || || |||||||| || ||||| ||||| ||||| |
Sbjct 17129566 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAAG 17129507
Query 36300 CAATAAGTCTCTCTCC 36315
||| | |||||| ||
Sbjct 17129506 CAACCACTCTCTCACC 17129491
>seq218
Length=12993727
Score = 114 bits (126), Expect = 2e-20
Identities = 98/121 (81%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239
|||| |||||||| || | |||||| ||||| |||||||| ||||||| || | || |
Sbjct 5719100 CCTCATCTCTACTGATGAGTTCGTTAGAAAAAGTGAGTCCAGGCATTAATCCCCTTTTCT 5719159
Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299
| |||||||| || || ||||| || ||||||||||| |||||||| ||||| ||||| |
Sbjct 5719160 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAG 5719219
Query 36300 C 36300
|
Sbjct 5719220 C 5719220
>seq537
Length=7949590
Score = 84.2 bits (92), Expect = 3e-11
Identities = 118/166 (71%), Gaps = 0/166 (0%)
Strand=Plus/Minus
Query 66799 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAA 66858
|||| |||| ||| || ||||||||||| | ||| || || || || || || || | |
Sbjct 7416267 CACTGAATACTTTCTTAGTTTCTTTGTGCAAATTGGACACTGCAATCCTTGCTGCCAGGA 7416208
Query 66859 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 66918
| || || || || |||| || || || || || |||| || ||||| || ||||
Sbjct 7416207 TAGCGTAGTCAGGGTGTTTGGTGGTCAGGGTTGCGGCCGTTTCAGCAGCCAGCGTATCCA 7416148
Query 66919 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 66964
||| |||||||| || ||| | || | ||| || || || |||||
Sbjct 7416147 GTTCCACCGTTGTGACACCACTGTACAGTCCCTGAATCACTTTCAT 7416102
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 658164383615320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |