Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Haliaeetus_20leucocephalus_20[refseq_20GCF_5F000737465.1_202014-08-
04] 1,023 sequences; 1,178,409,481 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq556 129 8e-25
seq218 123 3e-23
seq537 84.2 3e-11
>seq556
Length=21056529
Score = 129 bits (142), Expect = 8e-25
Identities = 110/136 (81%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146
|||||||||| ||||| | ||| ||||| || || ||||| ||||| ||||| | ||| |
Sbjct 17129626 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCT 17129567
Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206
| ||||||||||||| ||||| || || ||||||||||| ||||| ||||| ||||| |
Sbjct 17129566 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAAG 17129507
Query 42207 CAATAAGTCTCTCTCC 42222
||| | |||||| ||
Sbjct 17129506 CAACCACTCTCTCACC 17129491
>seq218
Length=12993727
Score = 123 bits (136), Expect = 3e-23
Identities = 100/121 (83%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146
||||||||||||| || | |||||| ||||| |||||||| ||||||| || | || |
Sbjct 5719100 CCTCATCTCTACTGATGAGTTCGTTAGAAAAAGTGAGTCCAGGCATTAATCCCCTTTTCT 5719159
Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206
| |||||||| || || ||||| || |||||||||||||||||||| ||||| ||||| |
Sbjct 5719160 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAG 5719219
Query 42207 C 42207
|
Sbjct 5719220 C 5719220
Score = 93.3 bits (102), Expect = 6e-14
Identities = 89/114 (78%), Gaps = 0/114 (0%)
Strand=Plus/Plus
Query 42317 TCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTT 42376
|| ||| |||||||| || || || || | |||||| |||||||||||||| || |||
Sbjct 5721222 TCTTTAGAATCTTTAATGTAGGTGTCAATAAGAAGACTGTACATTTCTGAATGTATATTT 5721281
Query 42377 TCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCT 42430
|| ||||| |||||||| || |||||||| | || || || | |||||||||
Sbjct 5721282 TCCATGGCAATCTGAAAGCCATAGAAACAGCGAGCTTCTGTGATTTGTACTTCT 5721335
Score = 86.0 bits (94), Expect = 8e-12
Identities = 76/95 (80%), Gaps = 0/95 (0%)
Strand=Plus/Plus
Query 41759 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCT 41818
||||| ||||||||| | || |||||||| || || || || || ||||| ||||| |||
Sbjct 5717835 GACATGACTCCCATTCTCTGATATTCACCTACTCGCTTCTCAAAGAAATTGGTCTTGCCT 5717894
Query 41819 TCCAATGATATATTTTCCATGAAATCAAACGGATT 41853
|| | || || ||||||||||| ||||| |||||
Sbjct 5717895 TCTAGAGAGATGTTTTCCATGAAGTCAAAAGGATT 5717929
>seq537
Length=7949590
Score = 84.2 bits (92), Expect = 3e-11
Identities = 101/135 (75%), Gaps = 2/135 (1%)
Strand=Plus/Minus
Query 72022 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 72081
||||| ||||| || |||||||||||||| || || | || || ||||| | || |||
Sbjct 7422296 ACTCGCTTCATGAAAAGATCAGGAATCCAGAGGGCAAAGAAAAGGTCTCTAGCTCGCTGC 7422237
Query 72082 TCCTCGTTTCCTGTATTCTT-TTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 72140
|| || || || || ||||| |||||| || || ||| | | || || ||||||| ||
Sbjct 7422236 TCTTCTTTCCCAGTGTTCTTCTTTAAG-TCAAGAAACTCAAAGATGTCCAAATGCCATGG 7422178
Query 72141 TTCCAAGTATATGGC 72155
|||| ||| |||||
Sbjct 7422177 CTCCAGGTAGATGGC 7422163
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 671130617807480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |