Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Haliaeetus_20leucocephalus_20[refseq_20GCF_5F000737465.1_202014-08-
04] 1,023 sequences; 1,178,409,481 total letters
Query= NC_006150.1
Length=221454
Score E
Sequences producing significant alignments: (Bits) Value
seq731 145 1e-29
seq307 111 2e-19
>seq731
Length=6069190
Score = 145 bits (160), Expect = 1e-29
Identities = 220/309 (71%), Gaps = 3/309 (1%)
Strand=Plus/Plus
Query 8679 GGAACGCGGCCAACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCAC 8738
|||| || | || ||||| ||||| |||||| | |||| || ||| | | |||
Sbjct 4073388 GGAAAGCAGTGAAAGGACAGCCTTTCACGTTGTTGCAGATGAGCTTCTGTAAGGAGGCAG 4073447
Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798
| |||| || |||| ||||| | ||| || |||||||| || |||||||| | ||||
Sbjct 4073448 TATTGATTATTTCAAAGCCCACTTTTCCACCAAAGGTGCTAGGCTTCCAGTACTCAGGGG 4073507
Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858
||||||| | || |||| || ||||| || || || || || || | ||| | ||
Sbjct 4073508 AGCAGATAGCATTTCCCATCAGTCCTTTCAGAGAGAATGGTGCTCCAATCTCCACCATTG 4073567
Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAA-TCCGGTGTACAACTCC 8917
| ||||| ||||| || || || |||||||| | |||||| || | ||||| ||||
Sbjct 4073568 TTTCACCAAAGATTGCACCTGGTCGTGGCTTTTCTA-CAAGAAGGCCTGGGTACAGCTCC 4073626
Query 8918 ACAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTGT- 8976
| ||| || ||||| || ||||| | ||||| || || ||||| |||||||||||
Sbjct 4073627 ATAGCATCAATGTCGCCATAAAGCTCTTCCAGTTCAGCTGCCATTTCTTTTTCTCCTGTA 4073686
Query 8977 TTTATTAAT 8985
||||| ||
Sbjct 4073687 ATTATTGAT 4073695
Score = 116 bits (128), Expect = 5e-21
Identities = 171/242 (71%), Gaps = 0/242 (0%)
Strand=Plus/Plus
Query 9622 ATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGA 9681
||||| | | | || || ||||| || || ||| ||| |||||||| || |||||||
Sbjct 4075393 ATGAGCCTACTAGTTTGGAACAGCTGCTCATCATCCCACTCTGGATGCTCCTGTTTCAGG 4075452
Query 9682 ACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGC 9741
| || || || | |||||||||||| ||||| || ||||| |||||||| | || ||
Sbjct 4075453 ATGTCACAGACCCGGTTGTGTTCCCTCAGCCATATTGTAGCATACATCATCAAGCCTGGG 4075512
Query 9742 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGA 9801
|||| || || |||| || || |||| | ||| | ||| || || | |||||
Sbjct 4075513 ACCAAACCGAACACCTCCTGCCCAACAGAAAACTGCAGGTGTTCAGGTACATGAGGAGGG 4075572
Query 9802 TAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATC 9861
|||||||| | |||| || || || | || ||||||||||| || || || |||
Sbjct 4075573 TAGATCATATCTGCCTGAGTGTCCTTCACTGTTGGTGGATACATTTCTCCATCGATCATC 4075632
Query 9862 TG 9863
||
Sbjct 4075633 TG 4075634
>seq307
Length=10662554
Score = 111 bits (122), Expect = 2e-19
Identities = 144/199 (72%), Gaps = 0/199 (0%)
Strand=Plus/Plus
Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798
|||| || || |||| || ||||| ||||| || |||||||||||||| | ||||
Sbjct 1114376 TCTTAACTATGTCAAAGCCAGTTTCTCCACCGAATGTACTGGGTTTCCAGTACTCTGGGG 1114435
Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858
|||||||| ||| | | || || || |||||||||||||| || | ||| | ||||
Sbjct 1114436 AGCAGATGGGGTTTCCAAGAAGCCCCTTCAGGGAAAACGGAGCTCCGATCTCCACCATGC 1114495
Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918
| || || || || | ||||| |||| || || | || || || | || |||||||
Sbjct 1114496 TTTCCCCAAAAATACCATTGGGTTGGGGTTTCTCAAGCAGCAAGCCCGGATAAAACTCCA 1114555
Query 8919 CAGCCTCGATGTCTCCGTA 8937
||| || |||||||| ||
Sbjct 1114556 GAGCATCAATGTCTCCATA 1114574
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 708515739739120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |