Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haliaeetus_20leucocephalus_20[refseq_20GCF_5F000737465.1_202014-08- 04] 1,023 sequences; 1,178,409,481 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq841 118 1e-21 seq396 100 3e-16 seq537 89.7 5e-13 >seq841 Length=5312791 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| | ||| |||||||| | ||| | ||| || ||||| || |||||||| || | Sbjct 4753363 CCACCCCTCAAGCGCAGCACAAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAC 4753422 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||||| || || ||||||||||| ||| |||| | | |||||| || || || Sbjct 4753423 AGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCAGGGGGA 4753482 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| ||| || ||||| | ||| | || || ||| ||| | Sbjct 4753483 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACT 4753542 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | ||| | ||| || ||||| || || || || || ||||||||| Sbjct 4753543 TCTAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCATG 4753590 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| | ||| |||||||| | ||| | ||| || ||||| || |||||||| || | Sbjct 4754209 CCACCCCTCAAGCGCAGCACAAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAC 4754268 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||||| || || ||||||||||| ||| |||| | | |||||| || || || Sbjct 4754269 AGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGGA 4754328 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| ||| || ||| | | ||| | || || ||| ||| | Sbjct 4754329 ATGCCTTCCTTGTCCTGGATCTTGGCCTTTACATTCTCGATGGTGTCACTGGGCTCAACC 4754388 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | ||| || ||||| || || || || || |||||||| Sbjct 4754389 TCAAGAGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCAT 4754435 Score = 95.1 bits (104), Expect = 1e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| | | ||||||||| | ||| | ||| || ||||| || |||||||| ||| Sbjct 4753590 GCCACCTCTAAGACGCAGCACAAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGA 4753649 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||||||| || || ||||||||||| ||| |||| | | |||||| || || || Sbjct 4753650 CAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCAGGGGG 4753709 Query 131127 GATTCCTTCTTTGTC 131141 || ||||| ||||| Sbjct 4753710 AATGCCTTCCTTGTC 4753724 >seq396 Length=9930490 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| || | || |||||||| | ||| | ||| || ||||| || |||||||| || Sbjct 5100964 GCCTCCCCTCAGGCGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGA 5100905 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || |||||| ||| || ||||||||||| || |||| | | |||||| || || || Sbjct 5100904 CAAGGTGCGTCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGG 5100845 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||| ||||| ||| || ||| | | ||| | || || ||| ||| | Sbjct 5100844 AATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAAC 5100785 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || || || || || || || ||||||||||| Sbjct 5100784 CTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAAATCTGCAT 5100737 Score = 100 bits (110), Expect = 3e-16 Identities = 162/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 131006 AGCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGC 131065 ||||||| | || |||||||| | ||| | || || ||||| || |||||||| || Sbjct 5101193 AGCCACCCCTCAGGCGCAGCACAAGATGGAGAGTGGATTCCTTCTGGATGTTGTAGTCAG 5101134 Query 131066 TCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAG 131125 || |||||| ||| || ||||||||||| || |||| | | |||||| || || | Sbjct 5101133 ACAGGGTGCGTCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGG 5101074 Query 131126 GGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGA 131185 | || ||||| ||||| ||| || ||| | | ||| | || || ||| ||| | Sbjct 5101073 GAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAA 5101014 Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGACT 131238 || | ||| | ||| || || || || || || || || ||||||||| || Sbjct 5101013 CCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATGCCT 5100961 >seq537 Length=7949590 Score = 89.7 bits (98), Expect = 5e-13 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 145688 CACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCG 145747 |||| |||||| || |||||||| || | || ||||||| || |||| |||||||| | Sbjct 7423593 CACAGATTGCTGCACTTGATGGTCCCTAAGTTCCGCTGATTGCTCTTCCGGTTGCACGAG 7423534 Query 145748 TCCTTGTAGAGCATGTACGGTCCGCCAGTCTC 145779 || ||||| |||||||||||| ||||||||| Sbjct 7423533 TCTTTGTACAGCATGTACGGTGTGCCAGTCTC 7423502 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472006764136320