Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Haliaeetus_20leucocephalus_20[refseq_20GCF_5F000737465.1_202014-08-
04] 1,023 sequences; 1,178,409,481 total letters
Query= NC_008291.1
Length=198050
Score E
Sequences producing significant alignments: (Bits) Value
seq556 114 2e-20
seq218 114 2e-20
seq537 93.3 5e-14
>seq556
Length=21056529
Score = 114 bits (126), Expect = 2e-20
Identities = 107/136 (79%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742
|||| ||||| ||||| | ||| ||||| || || ||||| ||||| ||||| | ||| |
Sbjct 17129626 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCT 17129567
Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802
| ||||||||||| | ||||| || || |||||||| || ||||| ||||| ||||| |
Sbjct 17129566 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAAG 17129507
Query 32803 CAATAAGTCTCTCTCC 32818
||| | |||||| ||
Sbjct 17129506 CAACCACTCTCTCACC 17129491
>seq218
Length=12993727
Score = 114 bits (126), Expect = 2e-20
Identities = 98/121 (81%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742
|||| |||||||| || | |||||| ||||| |||||||| ||||||| || | || |
Sbjct 5719100 CCTCATCTCTACTGATGAGTTCGTTAGAAAAAGTGAGTCCAGGCATTAATCCCCTTTTCT 5719159
Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802
| |||||||| || || ||||| || ||||||||||| |||||||| ||||| ||||| |
Sbjct 5719160 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAG 5719219
Query 32803 C 32803
|
Sbjct 5719220 C 5719220
Score = 82.4 bits (90), Expect = 1e-10
Identities = 75/95 (79%), Gaps = 0/95 (0%)
Strand=Plus/Plus
Query 32355 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCT 32414
||||| ||||||||| | || |||||||| || || || || || ||||| || || |||
Sbjct 5717835 GACATGACTCCCATTCTCTGATATTCACCTACTCGCTTCTCAAAGAAATTGGTCTTGCCT 5717894
Query 32415 TCTAATGATATATTTTCCATGAAATCGAATGGATT 32449
|||| || || ||||||||||| || || |||||
Sbjct 5717895 TCTAGAGAGATGTTTTCCATGAAGTCAAAAGGATT 5717929
>seq537
Length=7949590
Score = 93.3 bits (102), Expect = 5e-14
Identities = 120/166 (72%), Gaps = 0/166 (0%)
Strand=Plus/Minus
Query 63810 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 63869
|||| |||| ||| || ||||||||||| | ||| || || || || || || || || |
Sbjct 7416267 CACTGAATACTTTCTTAGTTTCTTTGTGCAAATTGGACACTGCAATCCTTGCTGCCAGGA 7416208
Query 63870 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 63929
| || || || || |||| || || || || || |||| || ||||| || ||||
Sbjct 7416207 TAGCGTAGTCAGGGTGTTTGGTGGTCAGGGTTGCGGCCGTTTCAGCAGCCAGCGTATCCA 7416148
Query 63930 ATTCTACCGTTGTTACACCATTATATATTCCTTGGATAACCTTCAT 63975
||| |||||||| |||||| | || | ||| || || || |||||
Sbjct 7416147 GTTCCACCGTTGTGACACCACTGTACAGTCCCTGAATCACTTTCAT 7416102
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 633623897430800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |