Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Haliaeetus_20leucocephalus_20[refseq_20GCF_5F000737465.1_202014-08-
04] 1,023 sequences; 1,178,409,481 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
seq841 156 8e-33
seq396 141 2e-28
seq165 93.3 8e-14
>seq841
Length=5312791
Score = 156 bits (172), Expect = 8e-33
Identities = 160/208 (77%), Gaps = 1/208 (0%)
Strand=Plus/Plus
Query 68255 CAAG-TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTA 68313
|||| || || ||||| || || |||||||| || || || || || | ||||||||| |
Sbjct 4753382 CAAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCA 4753441
Query 68314 ACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAA 68373
|||||| || ||||| || || || || || || || ||||||||||||||||| || |
Sbjct 4753442 GCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGA 4753501
Query 68374 TCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTC 68433
|||| |||||||| ||| |||||||| | || ||||| | ||||||||| || |
Sbjct 4753502 TCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACTTCTAGGGTGATGGTCTTGC 4753561
Query 68434 CCGTGAGGGTCTTGACGAATATCTGCAT 68461
| || |||||||| || || ||||||||
Sbjct 4753562 CGGTCAGGGTCTTCACAAAGATCTGCAT 4753589
Score = 152 bits (168), Expect = 9e-32
Identities = 160/209 (77%), Gaps = 1/209 (0%)
Strand=Plus/Plus
Query 68255 CAAG-TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTA 68313
|||| || || ||||| || || |||||||| || || || || || | ||||||||| |
Sbjct 4754228 CAAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCA 4754287
Query 68314 ACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAA 68373
|||||| || ||||| || || || || || ||||| ||||||||||||||||| || |
Sbjct 4754288 GCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTGGA 4754347
Query 68374 TCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTC 68433
|||| ||||| || |||||||||||| | || || || | |||||||| || |
Sbjct 4754348 TCTTGGCCTTTACATTCTCGATGGTGTCACTGGGCTCAACCTCAAGAGTGATGGTCTTGC 4754407
Query 68434 CCGTGAGGGTCTTGACGAATATCTGCATT 68462
| || |||||||| || || |||||||||
Sbjct 4754408 CGGTCAGGGTCTTCACAAAGATCTGCATT 4754436
Score = 125 bits (138), Expect = 1e-23
Identities = 128/167 (77%), Gaps = 0/167 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || | ||| |||| || | || || ||||| || || |||||||| || |||||
Sbjct 4753591 CCACCTCTAAGACGCAGCACAAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAC 4753650
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | ||||||||| | |||||| || ||||| || || || || || || || |||
Sbjct 4753651 AGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCAGGGGGA 4753710
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTC 68401
|||||||||||||| || ||||| |||||||| ||| ||||||||
Sbjct 4753711 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTC 4753757
>seq396
Length=9930490
Score = 141 bits (156), Expect = 2e-28
Identities = 170/231 (74%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
||||| | ||||||| || | || || ||||| || || |||||||| || || ||
Sbjct 5100963 CCTCCCCTCAGGCGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAC 5100904
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
| || | || ||||| | |||||| || || || || || || || || ||||| |||
Sbjct 5100903 AAGGTGCGTCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGA 5100844
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|||||||||||||| || ||||| ||||| || ||| |||||||| | || ||
Sbjct 5100843 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACC 5100784
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465
|| | ||||||||| || || || |||||||| || || ||||||||| ||
Sbjct 5100783 TCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAAATCTGCATTTTG 5100733
Score = 141 bits (156), Expect = 2e-28
Identities = 162/218 (74%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303
||||||| || | || || ||||| || || |||||||| || || || || || |
Sbjct 5101182 AGGCGCAGCACAAGATGGAGAGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGT 5101123
Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363
|| ||||| | |||||| || || || || || || || || ||||| ||||||||||||
Sbjct 5101122 CCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCC 5101063
Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423
||||| || ||||| ||||| || ||| |||||||| | || || || | ||||
Sbjct 5101062 TTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTG 5101003
Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
||||| || || || |||||||| || || ||||||||
Sbjct 5101002 ATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 5100965
>seq165
Length=2051013
Score = 93.3 bits (102), Expect = 8e-14
Identities = 83/104 (80%), Gaps = 0/104 (0%)
Strand=Plus/Plus
Query 68358 CCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCC 68417
|||||||| || || ||||| ||||||||| |||||| ||||| | || || |||
Sbjct 1965300 CCTTCCTTATCCTGGATCTTGGCCTTGACGTTCTCGATCGTGTCGTTGGGCTCCACCTCC 1965359
Query 68418 AAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
| |||||||||||| ||||| || |||||||| || ||||||||
Sbjct 1965360 AGGGTGATGGTTTTACCCGTCAGCGTCTTGACAAAAATCTGCAT 1965403
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 921610614753560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |